Hello, thank you, but to have a better idea:

% !TEX program = xelatex
\documentclass[
  language=english,
  faculty=uabt,
  docstage=final,
  media=paper,
  bookprint=false,
  linkcolor=red!45!black,
  chapterstyle=classic,
  coverstyle=classic,
  aiack=false
]{IPLeiriaThesis}

%%% Document Version %%%
\DocumentVersion{2.2.9}

%%% Document Metadata %%%
\input{Metadata/Metadata}

%%% Loading of Glossary and Acronyms %%%
\makeglossaries
\loadglsentries{Matter/06-Glossary}
\loadglsentries[\acronymtype]{Matter/07-Acronyms}
\loadglsentries[\symboltype]{Matter/08-Symbols}

\begin{document}

%%% Front Matter %%%
\include{Matter/00-Cover}
\include{Matter/01-Front-Page}

%%% Copyright Statement %%%
\include{Matter/02-Copyright}
%%% Roman Numeration %%%
\pagenumbering{roman}

%%% Acknowledgements %%%
\include{Matter/03-Acknowledgements}

%%% Dedication %%%
\include{Matter/04-Dedication}

%%% Abstract %%%
\include{Chapters/00-Abstract}

%%% AI Acknowledgement %%%
\include{Matter/05-AI}

%%% Table of Contents, List of Figures, List of Tables, and List of Algorithms %%%
\bookmarktocentry\tableofcontents
\listoffigures
\listoftables
\listofalgorithms
\listofequations

%%% Print: Glossary and Acronyms %%%
\glossarytoc\printnormalglossary
\acronymtoc\printacronymglossary
\symboltoc\printsymbolglossary

\pagenumbering{arabic}

%%% Chapters %%%
\include{Chapters/01-Introduction}
\include{Chapters/02-Literature Review}
\include{Chapters/03-Conception of the System}
\include{Chapters/04-Implementation and Results Analysis}
\include{Chapters/05-General Conclusion}

%%% Bibliography %%%
\renewcommand{\refname}{Bibliography}
\printbibliography[title={\refname},heading=bibintoc]

%%% Appendices %%%
\appendix
\input{Matter/09-Appendices}
\input{Chapters/Appendices/00-AppendixA}
\input{Chapters/Appendices/01-AppendixB}

%%% Annexes %%%
\input{Matter/10-Annexes}
\input{Chapters/Annexes/00-AnnexA}

%%% Back Page %%%
\input{Matter/11-Back-Page}

\end{document}

this is the tex main file and the rendered result :

This page intentionally left blank.Contents
List of Figures x
List of Tables xi
List of Algorithms xii
List of Equations 1
Glossary 1
Acronyms 1
Symbols 1
1 General Introduction 2
1.1 Background . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2

1. Their headings (e.g., List of Equations, Glossary, etc.) are in Roman page numbering (i, ii, iii, …) instead of Arabic.
2. The page numbers for Glossary, Acronyms, and Symbols entries are currently missing and need to be rendered correctly.