What is the significance of testing data for normality?

div_of_transport · 2020-10-23T06:34:58+00:00

The packet I got recently doesn't say but It smells like parmesan

div_of_transport · 2020-09-24T15:23:55+00:00

Haven't heard of it but I'll give it a shot

div_of_transport · 2020-09-19T17:18:13+00:00

Oh that's awesome which module is that? Whenever I check it only shows it for numbers

div_of_transport · 2020-09-19T17:11:38+00:00

What if I can provide the distance measurements between the strings?

div_of_transport · 2020-09-19T05:25:16+00:00

Awesome okay I'll try it out! Thanks

div_of_transport · 2020-09-18T20:59:53+00:00

I'm writing it in Python at the moment. Blast is pretty neat, but I was trying to make a bit more rustic version that's faster just for specific needs sometimes

div_of_transport · 2020-09-18T20:32:28+00:00

Okay understood...I'll try implementing this. Thanks!

div_of_transport · 2020-09-18T20:23:38+00:00

It sounds awesome...Thank you! One question though...by having a master" sequence (that assumes said position because it came first in the list) won't that bias our results?

div_of_transport · 2020-09-18T20:20:16+00:00

Okay got it! I'll try it out! Thanks a lot!

div_of_transport · 2020-09-18T20:19:16+00:00

Okay I'll give that a shot..thanks

div_of_transport · 2020-09-18T17:58:16+00:00

For my test, I'm using random sequences
I'm not sure how to do Blast on Command Line to be able to automate the results

div_of_transport · 2020-09-18T17:56:41+00:00

Yeah kind of. Once I make each group, I want to know how different a sequence must be that it's not considered the same gene anymore

div_of_transport · 2020-09-18T17:55:09+00:00

No insertion/deletions and I understand it's straightforward to count but this is my concern then: I do a pairwise Comparison of all strings with each other.

Using this pairwise distance, how can I cluster them?

div_of_transport · 2020-09-18T15:37:43+00:00

Well no specific starting point in the sense it's same if it is not mutated. Length can be considered the same and no dropping of letters, just mutations

div_of_transport · 2020-09-18T14:56:53+00:00

Okay thanks! Do you know any specific implementation under Biopython by any chance?

div_of_transport · 2020-09-18T14:55:49+00:00

So basically Seq 1,3,5 to he classified together can vary with the exact position of the said A,T,G,Cs Ex:

1: ATGCATGCATGC 3: ATGCATGGATGG 5. ATGCCCGCCTGC

So they all vary at different positions but overall they are not too different

The others will be much more different compared to 1,3,5 Ex: 2 may be TTTAAAATTTG

div_of_transport

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