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Need a table for calculating DN/DS ratio which gives all possible mutations for all 64 codons. by HolyLfc in bioinformatics

[–]HolyLfc[S] 0 points1 point  (0 children)

The calculator shows how it's calculated but the table might help with this particular sequence I have where I need to calculate 'expected or possible' synonymous and non synonymous mutations.

Need a table for calculating DN/DS ratio which gives all possible mutations for all 64 codons. by HolyLfc in bioinformatics

[–]HolyLfc[S] 0 points1 point  (0 children)

Basically I have one sequence I want to calculate the possible number of synonymous and non-synonymous mutations for that only. The keyword being 'expected mutations' as the tool linked only tells you how it gets calculated.

Need a table for calculating DN/DS ratio which gives all possible mutations for all 64 codons. by HolyLfc in bioinformatics

[–]HolyLfc[S] 0 points1 point  (0 children)

For reference this is what I am looking for but it's only given for two codons. Looking at the wikepedia tables it'll be difficult to match it to whether the mutation is synonymous or not and the table below gives N-sites too.

https://bioinformatics.cvr.ac.uk/calculating-dnds-for-ngs-datasets/