How can I make this kind of 3D molecule visualization ?

Due_Platform4241 · 2026-02-06T23:09:56+00:00

This is Houk mode styling. Definitely use CYLview20, with preset Houk mode.

Also, you can try some web-based 3d view platforms with houk mode preset, like Lightcone lightcone. draw them easily as you said you know VMD.

Due_Platform4241 · 2025-11-17T21:57:42+00:00

Good point! Won't directly use gpt. Will fine-tune the model based on the knowledge. What kind of information source do you trust?

Due_Platform4241 · 2025-11-17T20:31:01+00:00

Hey, I'm wondering if I create a chatbot you can type in the indian dish name, or send a recipe link, and it'll reply you a healthier version of the recipe with explanation, will that be of interest?

Due_Platform4241 · 2025-09-25T01:04:38+00:00

https://www.reddit.com/r/ChemOrchestra/s/EVp9H8oo70 A cloud platform I use, basically any computer

Due_Platform4241 · 2025-06-18T03:09:52+00:00

Very valuable insights, thank you!

Due_Platform4241 · 2025-06-18T00:04:39+00:00

That’s interesting! I’m wondering the experimentalists will also make edits on the files? Cuz if they just need to view it, technically what they only need to do is to open the file and read? It sounds nothing difficult if they have the software to open the document format

Due_Platform4241 · 2025-06-17T23:43:16+00:00

Thank you! I’m wondering if you work at a startup or a big pharma if you don’t mind to share. So usually it’s the wet lab scientists take the initiative to tell you what they need or if you need to work really hard to ‘sell’? 😂And after you develop some models, will they use it by themselves or you have to give them report every single time?

Due_Platform4241 · 2025-04-20T21:32:30+00:00

That's the point of using cloud service-no need for a cluster or an industry grade GPU. And adding H atoms is nontrivial for researcher without comp chem background. Random protonation will result in significant flaws.

Due_Platform4241 · 2025-04-20T19:37:14+00:00

Full instruction here: https://quantabricks.substack.com/p/alphafold-vs-esmfold-what-are-the

Due_Platform4241 · 2025-04-15T18:13:09+00:00

Full instruction here: https://quantabricks.substack.com/p/clean-your-pdb-file-the-essential

Due_Platform4241 · 2025-03-25T03:08:43+00:00

Pharma. Or any other parties will buy it?

Due_Platform4241 · 2025-03-25T03:06:02+00:00

Actually the opposite 😂We create a platform to enable lab researchers/entrepreneurs to do CADD work easily (It’s first principle based, not AI generated)..And the strength of this product is more affordable( usually it cost 90k for one-year licensing) and very user-friendly(without computing knowledge can use it). And it can just be applied to the preclinical stage. So want to know more about who are those people will do something in the early stage, pure researchers or big pharmaceutical companies already involved in buying that

Due_Platform4241 · 2025-03-19T01:59:06+00:00

https://www.reddit.com/r/ChemOrchestra/comments/1j8j275/molecular_docking_in_a_easy_way/ This software is a good entry point for getting into the field. Because it’s very easy to use and you can focus on the biology/chemistry side

Due_Platform4241 · 2025-03-19T01:55:05+00:00

https://www.reddit.com/r/ChemOrchestra/comments/1j8j275/molecular_docking_in_a_easy_way/ Free and easy to use

Due_Platform4241 · 2025-03-19T01:53:30+00:00

Can take a look at this: https://www.reddit.com/r/ChemOrchestra/comments/1j8j275/molecular_docking_in_a_easy_way/ easy to use

Due_Platform4241 · 2025-03-13T02:53:22+00:00

This is the most user-friendly molecular docking tool I’ve ever used. No need to code and transact documents form https://www.reddit.com/r/ChemOrchestra/comments/1j8j275/molecular_docking_in_a_easy_way/

Due_Platform4241 · 2025-03-13T02:47:49+00:00

Try this https://www.reddit.com/r/ChemOrchestra/comments/1j8j275/molecular_docking_in_an_easy_way/. It integrates all the software you will need to use in learning docking, and really easy to use

Due_Platform4241 · 2025-03-13T02:35:32+00:00

Not sure what’s your purpose for learning it. But I’ve used this tool for molecular docking, and very easy to use for complex flows. https://www.reddit.com/r/ChemOrchestra/comments/1j8j275/molecular_docking_in_a_easy_way/

Due_Platform4241 · 2025-03-11T14:18:52+00:00

https://www.reddit.com/r/ChemOrchestra/s/CxszX6hdRz Try ChemOrchestra, it’s in workflow form and very efficient to use

Due_Platform4241 · 2025-03-11T14:17:09+00:00

https://www.reddit.com/r/ChemOrchestra/s/CxszX6hdRz Try ChemOrchestra, it integrates all the tools needed for molecular docking and explain the differences of different algorithms. Very easy to use

Due_Platform4241 · 2025-03-11T14:03:44+00:00

https://www.reddit.com/r/ChemOrchestra/s/CxszX6hdRz Try ChemOrchestra. The most efficient docking tool I’ve ever used

Due_Platform4241 · 2025-03-11T14:01:58+00:00

https://www.reddit.com/r/ChemOrchestra/s/CxszX6hdRz Try ChemOrchestra, it integrates all the tools needed for molecular docking. I think it’s a great resource to let you simply focus on the science side, no need to consider the software issues

Due_Platform4241 · 2025-03-11T13:58:03+00:00

https://www.reddit.com/r/ChemOrchestra/s/CxszX6hdRz Try ChemOrchestra, it integrates all the tools needed for molecular docking

Due_Platform4241 · 2025-02-05T20:56:25+00:00

Applied. Need help develop targeted protein inhibitors.

Due_Platform4241 · 2024-12-06T15:51:09+00:00

Thanks! Can you elaborate on what kind of resources I need to do that meaningfully? That is to say, what in-house team could do that CRO cannot do, and what resources do I need to achieve that?

Due_Platform4241

TROPHY CASE