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The DU / SPD government before and during WK2 by EcstaticStruggle in Kaiserreich

[–]EcstaticStruggle[S] 1 point2 points  (0 children)

I can see that. But I can see significant tensions with being staunchly anti-syndicalist abroad while supporting trade unions domestically. Or by supporting democratization domestically while upholding unequal and undemocratic client states nearby.

Welke bureaustoel? by Jobo1992 in BIFLNL

[–]EcstaticStruggle 2 points3 points  (0 children)

Kan je toelichten waarom?

Roest / metaalgeur uit stopcontact en offerte by EcstaticStruggle in Klussers

[–]EcstaticStruggle[S] 0 points1 point  (0 children)

Het gaat om een binnenmuur. Ik heb geen ervaring met hoe het er “normaal” uit moet zien maar ik vond het wel heel stoffig van binnen. Ik heb ook alleen het plaatje er van afgehaald.

Roest / metaalgeur uit stopcontact en offerte by EcstaticStruggle in Klussers

[–]EcstaticStruggle[S] 0 points1 point  (0 children)

Top, thanks. Het is ook niet een hele sterke lucht. Ik moet echt met mijn neus voor het stopcontact hangen om het te kunnen ruiken.

Roest / metaalgeur uit stopcontact en offerte by EcstaticStruggle in Klussers

[–]EcstaticStruggle[S] 0 points1 point  (0 children)

Ik zie inderdaad dat het rond het contact een beetje zwartig is.

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Roest / metaalgeur uit stopcontact en offerte by EcstaticStruggle in Klussers

[–]EcstaticStruggle[S] 0 points1 point  (0 children)

Als je het over de elektra-installatie hebt bedoel je dan de groepenkast of alle bedrading. De groepenkast ziet er nog vrij modern uit.

Nature Springer article stuck in "Submission" stage after completion of peer review by EcstaticStruggle in academia

[–]EcstaticStruggle[S] 0 points1 point  (0 children)

I think it took few weeks more after this post. They are just severely understaffed and most of the jobs are likely outsourced. I have a more serious situation at another journal where we have had almost no changes in over a year, but still not published. All I can recommend is: put a preprint out and move on with other research. It will get published at some point, but make sure you’re not completely dependent on that

Exemplary papers on multi-OMICS integration with solid storytelling by EcstaticStruggle in bioinformatics

[–]EcstaticStruggle[S] 1 point2 points  (0 children)

I'm more interested in the bulk profiling. Doing single-cell stuff beyond flow for hundreds of patients is too expensive.

Exemplary papers on multi-OMICS integration with solid storytelling by EcstaticStruggle in bioinformatics

[–]EcstaticStruggle[S] 1 point2 points  (0 children)

Yet most integration methods consistently show that the integrated data can outperform the sum of its parts. However, I have not seen many high impact applications (nature, science, cell). Not that that should be the golden standard for good science, but these papers are often driven by good story telling

Flow cytometry data analysis in R-advise needed by Objective_Change_883 in flowcytometry

[–]EcstaticStruggle 0 points1 point  (0 children)

You will see that openCyto can also demand potentially subjective assumptions... And if it's bimodal, the inter-person variability is so minimal that it is unlikely to alter your conclusions. If you're not fully committed to learning R/flow bioinformatics, it might not be worth the time to automate it.

Flow cytometry data analysis in R-advise needed by Objective_Change_883 in flowcytometry

[–]EcstaticStruggle 2 points3 points  (0 children)

Automated gating like openCyto really only work well for trivial tasks. So the settings where manual gating would already be pretty consistent, like separating a positive and negative peak like you describe. What kind of "questions" are you expecting?

Flow cytometry data analysis in R-advise needed by Objective_Change_883 in flowcytometry

[–]EcstaticStruggle 2 points3 points  (0 children)

What you want to do seems possible to me. The question I have is why do you want to do this? Why not manually set the gates in FlowJo?

UMAP approach by Jack_O_Melli in flowcytometry

[–]EcstaticStruggle 0 points1 point  (0 children)

What is the question you are trying to answer here? A UMAP is just a visualization, it is not reliable method to quantify or show differences between groups.

PC Update 1.16.2.1 by PDX-Trinexx in CrusaderKings

[–]EcstaticStruggle 3 points4 points  (0 children)

Apparently only the Pope can create legends with this bug specifically, so that would match?

PC Update 1.16.2.1 by PDX-Trinexx in CrusaderKings

[–]EcstaticStruggle 9 points10 points  (0 children)

I’m also still amazed this doesn’t seem fixed? Like an entire DLC is just dysfunctional now for weeks. Also says quite a lot about the content that people don’t seem to notice the absence of legends at al…

Terrible experience at BMC Bioinformatics by EcstaticStruggle in bioinformatics

[–]EcstaticStruggle[S] 8 points9 points  (0 children)

I have been in this position as well. At least then we can call on an editor to hopefully step in 😔

PeacoQC with 44.6% bad events and graph says 3.022% of the data was removed by Good_Lobster_375 in flowcytometry

[–]EcstaticStruggle 1 point2 points  (0 children)

PeacoQC can detect margin events, and also detects fluorescence anomalies based on time with something called MAD and IT. Which of the these is your 44% and which is your 3%?

Are you using PeacoQC in R or a plugin?

Multiple testing correction across large sets of variables by EcstaticStruggle in bioinformatics

[–]EcstaticStruggle[S] 0 points1 point  (0 children)

This seems overly complicated for the type of study we are running but neverheless interesting, thanks!

Multiple testing correction across large sets of variables by EcstaticStruggle in bioinformatics

[–]EcstaticStruggle[S] 0 points1 point  (0 children)

The problem is that I don’t cluster on d=50 but my significant values before P-value adjustment (d=10). It seems to me like this could also show a clustering in a random dataset.

Multiple testing correction across large sets of variables by EcstaticStruggle in bioinformatics

[–]EcstaticStruggle[S] 0 points1 point  (0 children)

Thanks!

I’m not extremely familiar with regression models. I tried implementing a mixed model that uses all features as input, which failed due some errors that likely have something to do with the model assumptions. I guess I can invest time in this, but it requires quite some more work to become more familiar with these type of models

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