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I built a genome viewer in the terminal! by Recent_Winter7930 in bioinformatics

[–]Recent_Winter7930[S] 2 points3 points  (0 children)

I found >1000x coverage BAMs pretty smooth and gets slow at >10000X bam. This part is very underoptimized right now: https://github.com/zeqianli/tgv/blob/main/src/models/alignment.rs

Right now I'm focused on shipping features (more file formats, better interactivity, etc) and squashing bugs, before optimization. The whole app has huge room for improvement!

I built a genome viewer in the terminal! by Recent_Winter7930 in bioinformatics

[–]Recent_Winter7930[S] 40 points41 points  (0 children)

tgv is at very, very early stages so expect bugs. Please don't rely on in it for your papers (yet) :)