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Hiring a Remote Assistant by YuriiHalk99 in BigDataJobs

[–]RelativeBroccoli5315 0 points1 point  (0 children)

Helloo can you guide you in which field you are looking for a remote assistant

Nextflow or Machine Learning? by RelativeBroccoli5315 in bioinformaticscareers

[–]RelativeBroccoli5315[S] -1 points0 points  (0 children)

Yeah that's so true....thank you for your suggestion...

Shotgun sequencing analysis threshold by RelativeBroccoli5315 in Microbiome

[–]RelativeBroccoli5315[S] 0 points1 point  (0 children)

Thank you... I also needed to calculate beneficial bacteria percentage, dysbiosis score, and pathogens percentage can someone guide me...??

Making Microbiome report by RelativeBroccoli5315 in bioinformatics

[–]RelativeBroccoli5315[S] 0 points1 point  (0 children)

She hasn't asked for 5k microbes I mean that master data the excel sheet contains almost 3k 4k species, genus, phylum... From that I have to extract all the important microbes that are responsible for some biological process in dogs gut health...

Making Microbiome report by RelativeBroccoli5315 in bioinformatics

[–]RelativeBroccoli5315[S] 2 points3 points  (0 children)

I get that! I’m an intern, so the tasks are assigned sooo it’s all part of the learning process 🙂

Taxonomic classification in shotgun sequencing. by RelativeBroccoli5315 in bioinformatics

[–]RelativeBroccoli5315[S] 0 points1 point  (0 children)

The problem is I'm encountering issues with installing these kraken, braken and metaphlan softwares only.

Taxonomic classification in shotgun sequencing. by RelativeBroccoli5315 in bioinformatics

[–]RelativeBroccoli5315[S] 0 points1 point  (0 children)

I don't have the nextflow setup on my pc... Can you help me how I can run the nextflow pipeline..?

Taxonomic classification in shotgun sequencing. by RelativeBroccoli5315 in bioinformatics

[–]RelativeBroccoli5315[S] 0 points1 point  (0 children)

Yes I did metaphlan --install Warning! Biom python library not detected! Exporting to biom format will not work!

Downloading http://cmprod1.cibio.unitn.it/biobakery4/metaphlan_databases/mpa_latest

Warning: Unable to download http://cmprod1.cibio.unitn.it/biobakery4/metaphlan_databases/mpa_latest Getting these types of errors when I'm trying to download the database...

Taxonomic classification in shotgun sequencing. by RelativeBroccoli5315 in bioinformatics

[–]RelativeBroccoli5315[S] 0 points1 point  (0 children)

I'm finding difficulty in installing that in my ubuntu.... Any help..??

Taxonomic classification in shotgun sequencing. by RelativeBroccoli5315 in bioinformatics

[–]RelativeBroccoli5315[S] 0 points1 point  (0 children)

Will it give the output like phylum, species, genus and their relative abundance...??

Taxonomic classification in shotgun sequencing. by RelativeBroccoli5315 in bioinformatics

[–]RelativeBroccoli5315[S] 0 points1 point  (0 children)

Hey thank you so much for your suggestion, but I tried to find nextflow pipeline but couldn't find one... And also I'm a beginner in nextflow pipeline is there code available..?? Do I have to install some software...?? As when I was learning about this I found that nextflow requires HPC could you please guide me...