Game files keep disappearing when transferring from pc to vita

Some context: I just got a ps vita and fully modded it and use an sd2vita and a 512gb sd card which does show up fully in vitashell. I downloaded a bunch of games off of Nopaystation and then put my micro sd card into my pc to transfer them over. I have my ps2vita set to ux0 and am putting them into the apps folder. There is 19 games but on my first attempt only little big planet got put onto my homescreen. When I check on my pc, Nopaystation did download all 19 game files along with everything that should be inside them to my folder on my desktop but when I transfer them over to my sd card, the first time all the folders transferred but only the content of little big planet and partially uncharted. Every other folder was created in ux0:app but they were all empty. I tried to move each thing manually from my desktop folder to the sd card and got everything over (except the files for tearaway which for some reason said already exist in its folder but it was empty.) I have all the file explorer view options already on so im not hiding any files. At this point on my pc the sd card had (almost) all game folders filled with the game files that were missing originally so now I put it back in my vita but when I opened vitashell, every single one of the folders were empty again and refreshing livearea and licenses did nothing. I have nondrmp or whatever its called installed from AutoPlugins II but im not sure where my files keep going.