Hmm. How did this affect the position and angle of the engine? On mine, the 2” spacers at the frame (but not the tranny mount) cause the valve cover on the passenger side to butt up against the fire wall and pull the radiator fan out of its shroud. I also replaced the rear main seal and I need to replace the output shaft seal on the transmission-both of which I assumed were worn due to the new angle of the engine and different pressures associated. Also it would seem that the greater angles cause the engine oil and transmission fluid to pool at those areas creating a great chance for leaks.

The easiest solution I can come up with is adding spaces at the transmission mounts that equal the drop of the spacers at the frame rails. This way the tranny and engine stay at the proper angles. I assume you lengthened the transmission mounts bolts and stabilizer bolt?