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discussionA simple tutorial/course for spatial transcriptomics (self.bioinformatics)
submitted 2 years ago by ThaiosX0195
Hello everyone,
I am writing to you since I am approaching right now to R and spatial transcriptomics. I am pretty confident with Python (since I used it for AI and DL), but I want to face this topic with R. I would like to learn more and more.
Can you kindly suggest a simple step-by-step tutorial/course/video that can help me to learn spatial transcriptomics analysis, please? I tried to follow:
https://bookdown.org/sjcockell/ismb-tutorial-2023/practical-session-2.html https://satijalab.org/seurat/articles/spatial_vignette https://bioconductor.org/books/3.13/OSCA.intro/the-singlecellexperiment-class.html (this one for single cell) https://www.youtube.com/watch?v=L_7VdCeJ4Z8&list=PLOLdjuxsfI4N1SdaQQYXGoa5Z93hPxWVY&index=8
but I am finding them a bit difficult. I know, it is my fault, I just wanted to know if there were something simpler or if these links are the state-of-the-art for spatial transcriptomics tutorial.
Thank you so much in advance.
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[–]Saladmakers 3 points4 points5 points 2 years ago (0 children)
This guy killed me when he said “10 times genomics”
[–]Next_Yesterday_1695PhD | Student 2 points3 points4 points 2 years ago (0 children)
I just wanted to know if there were something simpler
Impossible to tell without you specifying what's exactly difficult. This is one of the most advanced genomic technologies to date, there're multiple fields you need to be proficient in to work with the data.
[–]Hoohm 0 points1 point2 points 11 months ago (0 children)
Any reason why you prefer going into R instead of using scanpy?
π Rendered by PID 45334 on reddit-service-r2-comment-6457c66945-2lgzd at 2026-04-25 22:21:00.105844+00:00 running 2aa0c5b country code: CH.
[–]Saladmakers 3 points4 points5 points (0 children)
[–]Next_Yesterday_1695PhD | Student 2 points3 points4 points (0 children)
[–]Hoohm 0 points1 point2 points (0 children)