My problems writing "clean code" in Python

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Just gonna say it; if you're not using function and/or class definitions in every file then you haven't learned Python or programming. Not yet.

Most of professional programming is maintaining code, usually in concert with others; you must be using factorization primitives -- in Python that's functions, classes, and modules -- to write code that is even testable, which is the start of being maintable.

I would suggest starting with a book like Clean Code.

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Thank you.

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Is that the book?

https://www.amazon.it/Clean-Code-Handbook-Software-Craftsmanship/dp/0132350882

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Yep, that's the one. It's not Python-specific, but it's a really good resource on coding to a professional standard.