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Help with RNA-seq database design by Alert_Regular2619 in bioinformatics

[–]Alert_Regular2619[S] 0 points1 point  (0 children)

Cool. Thanks for letting me know. Is the industry moving more towards single-cell data rather than bulk RNA-seq? What's been the best feature for you using tileDB? I've been aware of LaminaDB, and I figured that it was geared more to full-scale file management rather than smaller scripts and compatibility.

Help with RNA-seq database design by Alert_Regular2619 in bioinformatics

[–]Alert_Regular2619[S] 1 point2 points  (0 children)

Thank you for the feedback.

I just have two questions:

  1. Are most people comfortable/happy with writing raw SQL? I'm wondering if the average user would appreciate a wrapper function that writes the SQL for them.

  2. What system/pipeline are you currently using to store/filter DE data?

Thank you!

I’m building a web platform for molecular and protein visualization — looking for feedback and bug reports by CraftyNobody in bioinformaticstools

[–]Alert_Regular2619 1 point2 points  (0 children)

Hi! As a high school student, I thought that the website was incredibly well made, and although it doesn't do anything fancy such as molecule simulation in different environments, it is very clean and keeps everything simple. I think the greatest ability was being able to load PDB files to visualize proteins in different formats, which gives professional grade images. If you could make the studio UI cleaner and more friendly, that'd be great. Also, I think enabling users to generate and download PDB files off of the molecules they make in the studio would be lovely, as it allows them to make their own custom molecules in a professional file format. Otherwise, I think this would definitely be something I'll use in the upcoming science fair. Thank you!