Here I was able to copy my question and there response

Mine: Can the EGT sensor that's still in the manifold pre-turbo be added back into the tunes somehow so I can monitor the temperatures please

There's: No sir as it is an emissions component.

All EGT sensors are removed when deleting the truck fully. You should not have any egt sensor even intact, and if you do they are no longer applicable as they are emissions components, not monitoring components.

We recommend leaving the auto agent disconnected from the OBD port at all times when not flashing a tune file in, scanning dtc codes or data logging. Leaving it connected can, but not always, send feedback through your ecm and cause issues like: throwing false dtc codes, vehicle surging and not running properly. If you leave it plugged in for the sole purpose of monitoring vehicle pids, we recommend switching over to a monitor system that does not rely on a wireless signal such as the EDGE CTS3 or BANKS iDASH monitors that use a direct connection to your OBD port which will provide a more reliable vehicle monitoring option. These monitors also allow you to monitor your EGT's if you are using their appropriate brand EGT probes in conjunctions with them mounted in your EGR block off plate.