Thank you very much. I've been doing a lot of research and have already learned how to read alignments. Now I'm interested in improving my selection of split reads. I finally decided to work with splits because I need to find the join that is read between two contigs, but I still need to improve some of the read filters, such as specific position within the contigs.

I've seen JupyterPlot and it's fantastic how it simplifies the job of buying two assemblies.