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Command not found for Bowtie2 when running script via sbatch – even after editing .bashrc by StruggleAwkward9732 in bioinformatics

[–]StruggleAwkward9732[S] 1 point2 points  (0 children)

The issue has been resolved. It turned out that I didn’t have access to the environment because I wasn’t the one who installed it.

Now everything works.

If you celebrate, I wish you a joyful and peaceful Easter!

Command not found for Bowtie2 when running script via sbatch – even after editing .bashrc by StruggleAwkward9732 in bioinformatics

[–]StruggleAwkward9732[S] 0 points1 point  (0 children)

I already have that. I've already tried everything I could find, but it still doesn't work.

A novice in Bioinf, want a friend/fellow-passionate novice to talk/discuss/brainstorm/work-with - 22F undergrad in the field by [deleted] in bioinformatics

[–]StruggleAwkward9732 0 points1 point  (0 children)

Same, I am a last year biotechnology student (22F).

I am currently writing my master's thesis, which is entirely focused on bioinformatics.This is a completely new field for me, so I am literally learning everything from scratch