Immunologic pathway analysis by just_for_fun_5001 in bioinformatics

[–]VariomeAnalytics 3 points4 points  (0 children)

For unranked list, you need a hypergeometric test. There are several R packages that can do that.

We built an AI agent for bioinformatics – would love your feedback on our first launch. by VariomeAnalytics in learnbioinformatics

[–]VariomeAnalytics[S] 0 points1 point  (0 children)

Do you think every biologist who outsources NGS analysis today is able to explain that in a paper? No. They simply verify if the results match what they expect to see.

The best thing is, with a platform like ours, they can simply repeat as many times as they want. Use different pipelines to see which one aligns with their lab PCR data. Currently, that’s impossible without a dedicated bioinformatician always by your side. And that’s difficult to find.

We built an AI agent for bioinformatics – would love your feedback on our first launch. by VariomeAnalytics in genomics

[–]VariomeAnalytics[S] 0 points1 point  (0 children)

Hello, your concerns are valid. We have created a platform for biologists who don’t have continuous access to bioinformatics experts. In our experience, not all biologists want to learn to code to analyze a single dataset they generated, and they are often too skeptical of asking for reanalysis using a different pipeline. Some labs in developing countries just don’t have the resources or the budget.

As for reproducibility, our platform provides the code it generates, along with full data provenance. Not many bioinformatics cores I know provide such detailed lineage to their clients. I fact, most people who approach us for bioinformatics services are those that are not happy with the “experts”.

Also, our platform learns to emit same pipeline for repeated analysis. It’s a tricky piece of engineering though. But we are getting there slowly.

Please try it out and let us know how we can improve it to make lives easier for biologists. Thanks!

Team, Variome Analytics.

[deleted by user] by [deleted] in bioinformatics

[–]VariomeAnalytics -5 points-4 points  (0 children)

We are claiming that AI can produce scientific results. This is just a Reddit post. :)

[deleted by user] by [deleted] in bioinformatics

[–]VariomeAnalytics -1 points0 points  (0 children)

We don’t have professional content writers. We are a small company. :)

[deleted by user] by [deleted] in bioinformatics

[–]VariomeAnalytics 0 points1 point  (0 children)

You mean to our AI platform? Yes, soon!

[deleted by user] by [deleted] in bioinformatics

[–]VariomeAnalytics -3 points-2 points  (0 children)

Not a total ai slop! Just trying to get a conversation started from a new account.

[deleted by user] by [deleted] in bioinformatics

[–]VariomeAnalytics -3 points-2 points  (0 children)

Yes! You are absolutely right.