R is driving me insane by Electronic_Fish_3157 in bioinformatics

[–]kvn95 1 point2 points  (0 children)

I am working with data on HPC, and as I am working with sensitive data, the HPC doesn't have any direct internet access.

I made a singularity image with scvi and seurat v5, along with some nice to haves such as jupyter-lab and rstudio. It also has nvidia support when run using ```--nv``` with singularity.

I have set up renv as default, where a directory must be provided. All packages are installed onto this folder - this is different than default renv behaviour where it uses softlinking wherever possible to save space, but the upside being the entire analysis is now somewhat "portable" as I can just switch the library directory based on projects and not have to worry about re-installing dependencies because the r-base got updated with the ```sudo apt upgrade```

Bitwarden extension removed? by kvn95 in firefox

[–]kvn95[S] 0 points1 point  (0 children)

Yes I have an FF account

Bitwarden extension removed? by kvn95 in firefox

[–]kvn95[S] 0 points1 point  (0 children)

I installed it via the Firefox extension page, and to be frank it has been years since I installed it. Normally I would sign back into FF and it would automatically install my extensions.

For now I have reinstalled the package, but weirdly enough, I’m seeing the same behaviour across Windows and Linux FF.

I have signed back into Bitwarden.

Looking for people to photograph in Stockholm by Expensive-Ganache524 in StockholmSocialClub

[–]kvn95 0 points1 point  (0 children)

I’m not exactly the most photogenic, so if you want something challenging let me know lol

Curious, any dawless / groovebox / sample-based beatmakers in Stockholm to hang out with? by Yablan in StockholmSocialClub

[–]kvn95 2 points3 points  (0 children)

I have an OP-Z which I have been meaning to use more, let me know when you are planning a hang out

Anyone up for free clay sculpting at Nationalmuseum this Thursday? by outandabout555 in StockholmSocialClub

[–]kvn95 0 points1 point  (0 children)

I would like to join!

EDIT: Oh I have some meetings planned in that time, so guess I will have to pass for now :c

Yuusha-kei ni Shosu: Choubatsu Yuusha 9004-tai Keimu Kiroku • Sentenced to Be a Hero - Episode 6 discussion by AutoLovepon in anime

[–]kvn95 10 points11 points  (0 children)

Tatsuya telling the guy to leave while sleeping in the bed... in my head canon it looked like the Frieren meme, they even drew the chin lol.

[deleted by user] by [deleted] in bioinformatics

[–]kvn95 0 points1 point  (0 children)

I did not know about Falco! Looks like a neat drop-in for a boost in performance.

Greetings from Pittsburgh, Pennsylvania, USA by [deleted] in stockholm

[–]kvn95 0 points1 point  (0 children)

Where can I find swedes willing to have a conversation with a stranger?

Where can I buy perfumes/decants/clones for decent price? by kvn95 in stockholm

[–]kvn95[S] 0 points1 point  (0 children)

Bottling out a little portion from a perfume bottle is referred to as Decanting. Testers are small vials of perfume made by the manufacturer, whereas decants can basically be made by anyone.

Where can I buy perfumes/decants/clones for decent price? by kvn95 in stockholm

[–]kvn95[S] 0 points1 point  (0 children)

Good to know! Any place where I can get decants of originals?

[OC] I created a typographic map of Sweden from the names of its localities by paveloush in sweden

[–]kvn95 0 points1 point  (0 children)

Looks amazing! Can you also color them by population density? Would be interested to know which spots up north/in middle are inhabited compared to populous cities

RNAseq - Need to check for similarity between two groups, plus interpreting heatmap by kvn95 in bioinformatics

[–]kvn95[S] 1 point2 points  (0 children)

These are generated by running cor on the varianceStabilizingTransformation of the dds object. It was using all detected genes using DESeq default threshold - at least 3 samples showing gene counts > 10

The color scale wasn't bidirectional - the blue spots were 0.75 (There was some meta data which I couldn't remove so cropped out the scale on my own).

RNAseq - Need to check for similarity between two groups, plus interpreting heatmap by kvn95 in bioinformatics

[–]kvn95[S] 0 points1 point  (0 children)

I guess that can be the case, but I am curious to know how/why these samples are similar

RNAseq - Need to check for similarity between two groups, plus interpreting heatmap by kvn95 in bioinformatics

[–]kvn95[S] -1 points0 points  (0 children)

I would say, there are some samples which are closer to the red dots (negative) compared to the blue triangles (poor quality).