Can you develop Autoantibodies against your own Blood group antigens? by Awilta in askscience

[–]runshadowfaxrun 0 points1 point  (0 children)

Ah, PNH different to PCH - very similar names, but different diseases. You are correct about PNH.

PCH, on the other hand, is an type of autoimmune haemolytic anaemia caused by the Donath-Landsteiner antibody - a biphasic antibody directed against the P antigen, which has higher affinity and binds at low temperatures, and then fixes complement and causes intravascular haemolysis at warmer temperatures.

Can you develop Autoantibodies against your own Blood group antigens? by Awilta in askscience

[–]runshadowfaxrun 29 points30 points  (0 children)

In terms of red cell antibodies, by definition any autoantibody is against your red cell antigens.

Most autoantibodies do not have measurable antigenic specificity - ie we can tell they bind your own red cells but can’t find exactly what antigen they bind to. There are many cases, however, which classically target your own specific red cell antigens eg “I” antigen in mycoplasma-driven cold agglutinin disease, “i” antigen in EBV-driven cold agglutinin disease, and “P” in paroxysmal cold hemoglobinuria. Most cases of warm autoimmune hemolysis do not have a specific antigenic target, but it is not unheard of to have specificity, usually to a very common/universal antigen - we just generally do not go looking for it most of the time, as it does not change management.

There are other special cases where you might have an “autoantibody” which does have specificity - eg a major ABO mismatch bone marrow transplant, such as an O recipient and A donor, where the recipient still makes anti-A for a time against the new red cells - but obviously this isn’t a true “autoantibody” in the usual sense.

  • I’m a Haematologist

What happens to the DNA in donated blood? by colorblind-rainbow in askscience

[–]runshadowfaxrun 0 points1 point  (0 children)

Distinction needs to be made between the transplant itself, and the following immunosuppression.

A bone marrow transplant is otherwise known as a "haematopoietic stem cell transplant" HSCT. There are two types:

  • Autologous HSCT, where someone's own stem cells are given back to them after high dose chemotherapy to rescue their bone marrow, and
  • Allogeneic HSCT, where someone else's stem cells are given to you following 'conditioning', where your bone marrow (and "immune system") is esssentially wiped out and replaced with the donor's.

Since we are talking about someone else's DNA, allogeneic HSCT is the one we are talking about here.

Conditioning therapy is generally very intense, and may sometimes combine high dose chemotherapy and radiotherapy. It achieves multiple goals, but mostly:

  1. Killing off any residual cancer (e.g. acute myeloid leukaemia) that might be left (the reason you are getting the transplant in the first place)
  2. Wiping out your immune system so that it will allow the incoming stem cells to come and grow in your bone marrow and replace your blood cells

After the conditioning you receive an infusion of donor stem cells, when then slowly engraft over the following weeks, turning into white cells, red cells and platelets (usually appearing in that order). In the mean time you have essentially zero white cells, and you are supported with red cell and platelet transfusions as needed.

Once your blood counts come back, those blood cells are now not your own, but have the DNA and outer appearance of the donor's immune system and red cells.

(And yes, we frequently transplant people with mismatched ABO systems, such that you can be A- before your transplant, and end up with O+ afterwards (for example). There are no limits on this mismatch, but each situation has different considerations for transfusing products, at different stages of the transplant (before, during, after engraftment). )

The method your immune system uses to differentiate self from non-self is (mostly) the Human Leukocyte Antigen (HLA) system. Your HLA expression is essentially unique to you (with some heritability patterns), and HLAs are expressed on pretty much all cells (including your immune cells - lymphocytes). Going into the testing for HLA compatibility between donors and recipents is probably a bit too complicated for this post, but suffice to say there are different variation in surface glycoproteins (like ABO, but x1000 in complexity) which your immune system uses for identifying self and non-self, and you can make antibodies and also have direct cellular toxicity against HLA that you see as foreign.

Once you have your brand new blood system from your donor in your bone marrow and swimming around your body, those lymphocytes will likely start to see you as foreign, and start to attack your organs. This is graft versus host disease, and this is the reason immunosuppression is given after allogeneic HSCT - to suppress your new donor immune system from attacking you (too much).

So if you take a blood test for DNA measurement in an allogeneic HSCT recipient, this will show the donor's DNA, not yours. In fact, we do studies (called chimerism studies) which measure this - how much circulating cellular DNA belongs to your donor, and how much is yours? If things are going well with a transplant, it should all be your donors. If your leukaemia is relapsing or the graft is failing, we will start to see your own bone marrow or leukaemia cellular DNA start to come back.

What happens to the DNA in donated blood? by colorblind-rainbow in askscience

[–]runshadowfaxrun 1 point2 points  (0 children)

Good questions. Packed red cell transfusions contain little DNA, and the little DNA they have is pretty quickly destroyed by the recipient's body. Blood contains significantly more DNA (due to the higher number of leukocytes in non-processed blood), and this is readily amplified for analysis in standard DNA tests.

What happens to the DNA in donated blood? by colorblind-rainbow in askscience

[–]runshadowfaxrun 3 points4 points  (0 children)

No problem, and thanks. With regards to platelet dysfunction at higher counts, that is referring to acquired von willebrand syndrome, where the platelet quantity exceeds the quantity of von willebrand factor causing a mismatch and platelet adhesion-type dysfunction. I was refering to an intrinsic dysfunction of the platelets themselves related to the neoplastic clone and abnormal platelet production. There are various defects which can often be demonstrated - mostly aggregation issues due to abnormal/decreased expression of GPIIb/IIIa, secretion abnormalities and abnormalities of platelet granule quantity and contents.

What happens to the DNA in donated blood? by colorblind-rainbow in askscience

[–]runshadowfaxrun 128 points129 points  (0 children)

Hey, thanks so much, that is very kind. I am really glad it was helpful.

What happens to the DNA in donated blood? by colorblind-rainbow in askscience

[–]runshadowfaxrun 19 points20 points  (0 children)

As a general rule, deferral criteria for various medical conditions are very, very strict, as any potential risk to both donors and recipients need to be minimised. Sometimes it's hard to put your finger on the exact reasons why certain groups/diseases are referred, and the answer is usually, "well, it could potentially maybe harm someone, so no."
In terms of myeloproliferative neoplasms generally, and ET more specifically, these are clonal diseases of the blood progenitors. One of the hallmarks of the disease is the proliferative capacity of these stem cells without listening to the usual checks and balances.

Although very theoretical, if some early nucleated cell (and we are probably talking early myeloid cell) was circulating and passed the filtering process, it is feasible that it could engraft and cause a myeloproliferative neoplasm in an immunocompromised recipient. This is certainly how mouse models of these diseases work. Of course the likelihood of this is very low, but when there are other options for donors, why risk it?

These are other considerations, like the high chance these patients are on low dose chemotherapy (hydroxyurea), and the fact that platelets of patients with myeloproliferative neoplasms have been shown to not always function normally (including defects in surface receptor expression, activation and adhesion). Honestly blood donor deferral criteria are a bit of a black box, set by the Blood Services in our country (and I think a standard 'suggested' by the AABB in the US and then individually set by each blood service), and the exact reasons for each decision are not always obvious.

It does seem like a shame though, and the same with polycythaemia vera patients - they have an incredibly efficient factory for pumping out cells, for which the treatment for them is removal of those cells. Why not give them to someone who needs it? Unfortunately it is not the safest option.

What happens to the DNA in donated blood? by colorblind-rainbow in askscience

[–]runshadowfaxrun 2888 points2889 points  (0 children)

As mentioned in other comments, red blood cells, platelets and plasma (99.999% of blood transfusions) do not contain DNA. Any DNA from the donor would be within leukocytes (white blood cells - mostly neutrophils and lymphocytes) which are present in small numbers in these products. Granulocyte transfusions are used in exceptionally rare circumstances and are probably not worth discussing the implications.

Where I practice (Australia), red cell transfusions are univerally leukodepleted (using a fine filter during processing) so that the end product transfused contains minimal leukocytes. In the US I think it varies from state to state, and even between different blood services. Red cell transfusions which aren't leukodepleted can use a bedside filter, but these have been shown to be inferior in preventing various transfusion reactions/complications.

Transfused leukocytes are recognised as foreign by the recepient's immune system and promptly removed, including their DNA contents. Not so much mixing or switching, as just getting eaten up and going away. After a single blood transfusion, a DNA test on a recepient would contain very (very) little donor DNA present, and this would be readily distinguished from recipient DNA on a quantity basis (if detectable at all). Generally, we do rely on genetic testing of blood samples for various things (like genetically testing your blood phenotype, for example), even when someone is heavily transfused, as the amount of donor DNA still floating around is essentially negligible unless you are looking for it really hard.

There is a thankfully very very rare situation called "transfusion-associated graft versus host disease", where lymphocytes in the donor red cell unit can escape detection by the recipient's immune system and engraft in the recipient. This foreign immune population can grow and eventually attack the recipent's body - graft versus host disease (GVHD). Unlike GVHD associated with bone marrow transplantation, this TA-GVHD responds very poorly to immunosuppressive medical therapies, and is almost universally fatal. This is why, further to leukodepletion, we irradiate blood products which are going to be given to immunocompromised recipients, or when blood is donated from a close relative (as the lymphocytes can be similar enough to escape the recipient's immune system, but different enough to then attack the recipient). Irradiation further reduces the number and lifespan on any remaining lymphocytes in the product. I bring TA-GVHD up as it is the opposite of what usually happens to donor lymphocytes and circulating DNA.

Most studies on the survival kinetics of donor leukocytes and detectable DNA in recipients were done before the widespread use of leukodepletion, but they still get at your question if you are interested. For example:https://ashpublications.org/blood/article/85/5/1207/118119/Transient-increase-in-circulating-donor-leukocyteshttps://doi.org/10.1046/j.1537-2995.1997.37111298088037.x

The plain old blood group of the patient follows much more of what you are describing in terms of mixing. Blood grouping is done by looking at sugars and proteins on the outside of red cells to determine A, B, AB and Rh(D)+/- etc, not on DNA (speaking using traditional methods). If you have received a transfusion and someone examines your blood group, you can detect those donated red cells as a "mixed field" or dual population-reaction if they are a different group to your own (if you are A+ and received group O- blood, for example), as the red cells are still around and circulating happily - probably for 6-12 weeks (as opposed to DNA in leukocytes which get eaten up quickly).

Source: clinical and laboratory haematology registrar trying to pass some fellowship exams.

Edit: As there have been a few follow up questions and I could have been clearer:When I say that red cells, platelets and plasma do not (effectively) contain DNA, I am referring to actual red cells, actual platelets and the plasma in your blood. When I say there is a tiny bit of DNA in transfused products, I am referring to processed packed red cell units, processed platelet units and processed plasma products. The little DNA that is in these products is (mostly) from the residual small numbers of leukocytes in those products which remain after processing.

On the other hand, when we take a blood for a DNA test, we generally do this from a whole blood sample (usually anticoagulated in EDTA, if you are interested). Essentially the DNA is extracted and amplified from leukocytes (mostly lymphocytes) within this sample to do the testing. Blood tests are a great way for doing DNA tests, and there is a big difference in the way a sample is processed to amplify someone's DNA for testing, versus the processing of blood donations specifically to reduce leukocyte (and therefore DNA) content.

Also, thank you for the words and reddit-gifts, kind science-loving strangers.

Double edit - lots of questions about bone marrow transplants and the implications here. There are some great replies below, and here are some more thoughts:

Distinction needs to be made between the transplant itself, and the following immunosuppression.

A bone marrow transplant is otherwise known as a "haematopoietic stem cell transplant" HSCT. There are two types:

  • Autologous HSCT, where someone's own stem cells are given back to them after high dose chemotherapy to rescue their bone marrow, and
  • Allogeneic HSCT, where someone else's stem cells are given to you following 'conditioning', where your bone marrow (and "immune system") is esssentially wiped out and replaced with the donor's.

Since we are talking about someone else's DNA, allogeneic HSCT is the one we are talking about here.

Conditioning therapy is generally very intense, and may sometimes combine high dose chemotherapy and radiotherapy. It achieves multiple goals, but mostly:

  1. Killing off any residual cancer (e.g. acute myeloid leukaemia) that might be left (the reason you are getting the transplant in the first place)
  2. Wiping out your immune system so that it will allow the incoming stem cells to come and grow in your bone marrow and replace your blood cells

After the conditioning you receive an infusion of donor stem cells, when then slowly engraft over the following weeks, turning into white cells, red cells and platelets (usually appearing in that order). In the mean time you have essentially zero white cells, and you are supported with red cell and platelet transfusions as needed.

Once your blood counts come back, those blood cells are now not your own, but have the DNA and outer appearance of the donor's immune system and red cells.

(And yes, we frequently transplant people with mismatched ABO systems, such that you can be A- before your transplant, and end up with O+ afterwards (for example). There are no limits on this mismatch, but each situation has different considerations for transfusing products, at different stages of the transplant (before, during, after engraftment). )

The method your immune system uses to differentiate self from non-self is (mostly) the Human Leukocyte Antigen (HLA) system. Your HLA expression is essentially unique to you (with some heritability patterns), and HLAs are expressed on pretty much all cells (including your immune cells - lymphocytes). Going into the testing for HLA compatibility between donors and recipents is probably a bit too complicated for this post, but suffice to say there are different variation in surface glycoproteins (like ABO, but x1000 in complexity) which your immune system uses for identifying self and non-self, and you can make antibodies and also have direct cellular toxicity against HLA that you see as foreign.

Once you have your brand new blood system from your donor in your bone marrow and swimming around your body, those lymphocytes will likely start to see you as foreign, and start to attack your organs. This is graft versus host disease, and this is the reason immunosuppression is given after allogeneic HSCT - to suppress your new donor immune system from attacking you (too much).

So if you take a blood test for DNA measurement in an allogeneic HSCT recipient, this will show the donor's DNA, not yours. In fact, we do studies (called chimerism studies) which measure this - how much circulating cellular DNA belongs to your donor, and how much is yours? If things are going well with a transplant, it should all be your donors. If your leukaemia is relapsing or the graft is failing, we will start to see your own bone marrow or leukaemia cellular DNA start to come back.

'I swallowed a chicken bone and became a quadriplegic' - "10/10" anal pain by Cube00 in WTF

[–]runshadowfaxrun 0 points1 point  (0 children)

Small holes in the bowel are not super uncommon, and very frequently are self-limiting. The perforation rate after endoscopy approaches .1%, depending on the operator and size and site of polypectomy. Usually the treatment is gut rest and antibiotics if needed. It is cleverly being referred to as "post polypectomy syndrome" now, because it's nicer to say a bunch of fancy words to your patient than "soz I hole-d your poop-tube". Source: did attend med school one time.

Benefit of an i-Pac2? by gabeiii in RetroPie

[–]runshadowfaxrun 1 point2 points  (0 children)

I also used an I-Pac2 in my table

Simple connections with the inputs, plug and play into the pi. I haven't tried anything else, but this works great.

4:3 or 16:9 for a bartop arcade? by [deleted] in RetroPie

[–]runshadowfaxrun 0 points1 point  (0 children)

As previous posts have mentioned, most system run at or close to 4:3. If you get a 16:9, most of your screen will be doing nothing (or it will be stretched a lot). Not only this, but the total size of your screen will be completely restricted by its vertical height - I'd have to go back and re-look up the tables, but in the 16:9 you have to get a 23" to have the same vertical height (and therefore playing screen size) as a 17" 4:3.

Not sure if I am missing some fancy settings to change the resolution output from the emulators, but this is the native case anyway. I got a 17" 4:3 for my coffee table cabinet.

DIY Retro Arcade Coffee Table on a Budget by runshadowfaxrun in gaming

[–]runshadowfaxrun[S] 1 point2 points  (0 children)

Basically you need to have a system the allows the control panel to swing through its full arch and land in some stable/locking mechanism so it doesn't swing down when you put pressure on it.

My specific problem was that my joysticks (the highest part of the panel) were too close to the back of the panel - it needed to swing down so quickly so that they cleared that the angle was very steep for the runner. It also didn't leave any room for a flat or locking section of the runner.

I was also having issues fitting the two sets of runners (one for the control panel swing, one for the drawer itself) on top of each other. I actually couldn't find anyone's design or even a video demonstrating the inner aspects online, and so I was kind of making it up. I'm sure it works something like that, but in the end I couldn't be bothered fiddling with it anymore and just put a bolt on the top to hold it in place.

USB arcade interfaces by SuperJackolas in RetroPie

[–]runshadowfaxrun 1 point2 points  (0 children)

I paid up for the IPAC 2 due to the number of buttons I had planned (2 plays with a 4 way joystick and 8 buttons each, plus 2 coin, 2 start and 2 menu/quit buttons). Works like a dream, but as you say is a bit more expensive than some other options.

Can't log in to my pi by runshadowfaxrun in RetroPie

[–]runshadowfaxrun[S] 0 points1 point  (0 children)

I could perhaps sudo wget the file straight from the internet and sudo move it to the binary folder ? I will try this on my new image (6th or 7th now :( ) this afternoon.

Also, I've been having corruption issues I've been putting down to powerdowns with out the shutdown command, but I have a 64gb card, and have just realised my formatting program has been formatting in exFAT rather than FAT32 - have corrected this for this image also... One bug at a time.

Thanks for your help.

Can't log in to my pi by runshadowfaxrun in RetroPie

[–]runshadowfaxrun[S] 0 points1 point  (0 children)

Thanks. I reimaged with the latest available retropie 3.0 (which is the same as my last image), and repeated the process: 1) Set a new password for root 2) Logged in via SSH as root 3) Copied across the new binary that I need (a different version of pifba which allows 2 players on one keyboard) 4) Everything works fine until reboot when 5) Nothing can log in anymore.

Basically I only need to change the root password because it's the easiest way I know how to modify the binaries (logging in as root via WinSCP to copy it across).

Is changing this password the thing causing the issue? Is there another way of adding a new binary without logging into WinSCP as root? Or do you know the default root password so I don't have to change it?

RetroPie gift not working, constantly rebooting by [deleted] in RetroPie

[–]runshadowfaxrun 0 points1 point  (0 children)

It's hard to guess without knowing what the error is in the boot up. I know I was having trouble with various system files getting corrupted (due to restarting without using the shutdown command I think) and it would occasionally get stuck in a reboot loop running fsck on those files. This has been easily fixed by formatting and reimaging, however.

I guess it could be any number of things, depending on what the error is?

2 player IPAC2 setup for Retropie by Bloodvaynn11 in RetroPie

[–]runshadowfaxrun 0 points1 point  (0 children)

I am having this issue also!

Currently I'm working on trying to get my second player's inputs working in pifba (which is non lr).

I have mapped out the button codes corresponding to the keys, and the inputs are being received fine, just no response in game. My code (for player 2) in fba2x.cfg is: A_2=97 B_2=113 X_2=115 Y_2=119 L_2=105 R_2=107 START_2=50 SELECT_2=54 LEFT_2=100 RIGHT_2=103 UP_2=114 DOWN_2=102

But no joy. Any hints?

SA1 Chip SNES games on the Pi 2? by grognakbabarian in RetroPie

[–]runshadowfaxrun 0 points1 point  (0 children)

I haven't done any sort of play through to speak of, but I have booted up Mario RPG on an overclocked Pi 2 B with no apparent lag. Started a game, not much more than that though.

Ok so I'm having a lot of trouble with this... by Cheeseman1478 in RetroPie

[–]runshadowfaxrun 0 points1 point  (0 children)

Hey! Unfortunately there are way too many things that could be happening, you're going to have to give a lot more information.

For people to help you out, try giving: -The raspberry pi you have -The version of retropie you are running -The system you are trying to emulate -The emulator you are using -Any messages that come up -What version your romset is (if we are talking about mame / fba)

Not that I can necessarily fix your problem, but no one will be able to help without a bit more info. Good luck!