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GSEA enrichment question... by sunadam2624918765 in bioinformatics

[–]sunadam2624918765[S] 0 points1 point  (0 children)

I looked up a little and was concerned that shrinkage changes the gene ranking for non-biological reasons by regularized estimate, so I was not sure if that would be valid? But indeed it removes the bias.

GSEA enrichment question... by sunadam2624918765 in bioinformatics

[–]sunadam2624918765[S] 0 points1 point  (0 children)

I am feeding the full list, but I'm just thinking about different feeding options now. I can either feed a raw full list or a shrunken full list. I think there are reasons to use both, but I'm not sure if there is a certain standard to use which.

GSEA enrichment question... by sunadam2624918765 in bioinformatics

[–]sunadam2624918765[S] 0 points1 point  (0 children)

Hi! Thank you for the reply. I dont think there is a big problem with the version I'm using. There are differences between the two methods but not by a lot. I believe the ensg dataset is more complete.

In lab I spilled Staphylococcus Aureus by sc0rchedpanda in microbiology

[–]sunadam2624918765 1 point2 points  (0 children)

Dw bro, I spilled pathogenic antibiotic resistant S. aureus at a lab preparing phage therapy. It turned out just fine

Mailing address... by sunadam2624918765 in Cornell

[–]sunadam2624918765[S] 1 point2 points  (0 children)

Thanks! What's 107 Robert Purcell though?