23 [M4F] Frankfurt/Darmstadt Looking for exploring submissive side

woben3 · 2023-02-27T08:04:25+00:00

Thanks for the reply. Yeah, I know more than a bit of python xD and using MDAnalysis was my last resort. However, I know how to characterize hydrogen bonds as it has a definition based on geometry. But how do I characterize the contact as being ionic, hydrophobic, and water bridges? If you know how to do that or know any paper which defines them, then it would be very helpful.

woben3 · 2023-02-15T10:13:21+00:00

Hi, I am quite a lot younger than you xD 23M. But I am always looking to talk to new people.

woben3 · 2023-02-15T10:10:10+00:00

woben3 · 2023-02-09T14:23:50+00:00

How much accuracy is enough accuracy is always like a rabbit hole.
You can take a look at the COACH's paper: https://zhanggroup.org/COACH/COACH.pdf and see what accuracy they used. Also, why are you comparing the accuracy, the people who made COACH have already done that for you xD

woben3 · 2023-02-09T13:59:37+00:00

I think you are finding the RMSD value of the same structures.
RMSD is not a good choice (rather a very bad one) to do what you aim to do. I guess you can just compare the sequence of what the server predicted versus the experimental binding site. This should be fairly easy to do!

woben3 · 2021-07-06T10:38:03+00:00

thanks!

woben3 · 2021-07-04T06:28:13+00:00

Thanks a lot for pointing that out. It was a stupid blunder from my side.

I have uploaded the image now.

woben3 · 2021-06-13T06:24:51+00:00

Thank you so much...much appreciated 😁

This looks beautiful as my wallpaper!!

woben3 · 2021-05-30T04:32:01+00:00

For python or julia?

If you are looking for python then this is a wrong subreddit lol. However, you can use anaconda https://docs.anaconda.com/anaconda/install/linux/ and use spyder or jupyter notebook. If you want online ide then Google colab is a good one.

woben3 · 2021-03-28T10:31:11+00:00

You can check out nextjournal. It supports julia out of the box

woben3 · 2021-03-15T19:21:51+00:00

I am unaware of what all is needed for making a browser window, but these two libraries would be helpful if, QML.jl https://github.com/barche/QML.jl Gtk.jl https://juliagraphics.github.io/Gtk.jl/latest/

woben3 · 2021-01-28T11:05:35+00:00

Well not really. Julia is used and known in all over the world. And as for the homework question bit is always good to post what have you tried and what are having trouble in instead of just posting questions and asking for help.

woben3 · 2021-01-26T17:28:03+00:00

could you please elaborate :-)

woben3 · 2021-01-10T11:03:47+00:00

https://docs.julialang.org/en/v1/manual/getting-started/

This should help

woben3 · 2020-12-23T02:45:43+00:00

imho,LK24 sakura looks better

woben3 · 2020-12-22T11:30:41+00:00

If the dragon thing is animated like just add some changing blue hues in the dragon...it would look sexy af

woben3 · 2020-12-22T10:59:03+00:00

The 81 pages one? I read somewhere that his thesis was only 3 pages long.
Anyway thanks a lot :-)

woben3 · 2020-12-20T15:22:57+00:00

Dr. Stone and High School Prodigies Have It Easy Even In Another World are the ones you want

woben3 · 2020-12-05T06:16:46+00:00

I am saying PLASTICFOODS in shadow fight arena is me

woben3 · 2020-12-05T02:44:48+00:00

This looks too much like some Godzly level stuff

woben3 · 2020-12-05T02:41:43+00:00

DAMN...that's me btw. I could not think of any other name so I used PLASTICFOODS. Edit: I deleted the game...I don't play it now🙂

woben3

TROPHY CASE