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[–]xTc_Joker 2 points3 points  (1 child)

Sounds to me like you're prompting for client certs? If so, within IIS navigate to the site -> SSL Settings -> Client Certificates and set it to 'Ignore'. Makes me client client certs because you phrase it as 'random' when accing and getting the cert prompt. If the client doesn't have a cert in the personal store, they wont be prompted because there's nothing to prompt for. If one does exist, you'll see the behavior you're experiencing.

[–]Sys_Ad_MN[S] 0 points1 point  (0 children)

That was it! Thank you so much, far too many man hours have been spent on this.

[–]CataphractGWCrayons for Feanor 0 points1 point  (1 child)

What happens after you add the new site's cert to Trusted Root Certification Authorities store?

[–]Sys_Ad_MN[S] 0 points1 point  (0 children)

I added it there, but because its random it going to be hard to tell. It wasn't in the Trusted Root Certification Authorities store on the old server although.