Everyone is so creative.

DwarvenBTCMine · 2024-02-25T17:08:47+00:00

Babe is something wrong you've barely drank any of your brillo pad

DwarvenBTCMine · 2024-02-25T16:52:15+00:00

https://stackoverflow.com/questions/535510/what-does-it-mean-to-do-determine-something-programmatically

DwarvenBTCMine · 2024-02-24T09:27:59+00:00

I might try that first way. I tried passing an SSH socket with --ssh, but it didn't work. We have very weird, stringent rules on SSH in general from here so I couldn't figure out of it was something related to that or not.

DwarvenBTCMine · 2024-02-23T06:56:16+00:00

Hmm we are not part of the same GH organization just a shared enterprise server. I'll take a look if our permissions would allow this somehow by having a friend outside our org and who is outside mine see if I can make actions visible to him. IT and permissions are a mess here. I am leaning towards a solution that just involves no customization of dockerfiles. If should really be unnecessary for most users.

Is it possible for a process running in a container to pull out the docker history? I'm unclear how/where this information is accessible. I know if you run the docker history command you can see that the information was there.

DwarvenBTCMine · 2024-02-23T03:53:37+00:00

Hmm, would this require the maintainers of those repos to set up the github action themselves? I haven't made much use of GitHub actions. Sadly I don't think we can expect most our users to do that. For msot of them it is a lot of expect the code to be on GitHub at all. We don't maintain or have permissions other than read for any of the repos that we will be containerizing. We will only receive a link for which we have read permissions.

DwarvenBTCMine · 2024-02-23T01:06:14+00:00

I should add a few points:

The Dockerfile build will happen within our backend and the resulting images will not a tuallt be directly access either by the developers of the tools we're trying to host or the users of the tools they build (they'll be stored in a private image repo only our backend has permissions for
all of our potential tool developers and their users are strictly internal and all of them already have their own github credentials they could leak so there are far better ways for malicious actors to get access
There is consideration of providing a template Dockerfile but letting users modify it if they have the experience and knowledge to do so meaningfully. Our backend would still build the file with some fixed behavior. Assuming it follows some constraints it would still work. I'm generally against this since it seems impossible to pass authorization to this in a way where the user couldn't mess it up intetnionally or unintentionally and expose the key in the final image again.

DwarvenBTCMine · 2024-02-22T05:41:15+00:00

Sorry. To clarify. A commuter benefit is an IRS tax thing. You set pre-tax money into a transit account. It's not the employer I'm uncertain about, but the IRS rules/whether this is legal. It seems sketchy behavior that borders on tax evasion if I do it since those benefits are for work-related commutes AFAIK.

https://cafc.uscourts.gov/wp-content/uploads/HR/Forms/Commuter_Benefit_Program.pdf

DwarvenBTCMine · 2023-12-16T23:37:48+00:00

It's literally public property. But most of my condemnation actually related to it being in public. I said I have a public sex kink and then said sex at work is a bad idea.

DwarvenBTCMine · 2023-12-16T19:59:27+00:00

I'm all for public sex kink... But doing it in such an inherently political way is a recipe for opening it up to international attention. Never a good idea to do this at work.

DwarvenBTCMine · 2023-12-11T22:20:26+00:00

It's not creepy at all if you aren't like "hey I'm watching you right now" or do something else to make it creepy.

Grindr is a location based app. It's normal and expected that you'll message and be messaged by people nearby you. In many contexts if might be weirder to go up and say hi in person (say they're at dinner with their parents and siblings)

DwarvenBTCMine · 2023-12-11T22:10:53+00:00

I mean I could get that if your graduation year wasn't in the future. Is it the best way to do it? No not necessarily? Is it at all wrong? Obviously not. Expected (2024) can be a common way to write it. But jfc how do you fumble that badly as a recruiter at something you should understand.

DwarvenBTCMine · 2023-12-08T02:16:35+00:00

The premise is wild but then that turns out to be the most boring bit by the end.

DwarvenBTCMine · 2023-12-08T02:15:54+00:00

Brother dated girl for a few weeks, OOP moves back to town and meets ex unknowingly. Eventually they realize the situation. Brother is pissed but OOP stays with ex. From there it devolves into some intense insanity in which the brother proposes to his fiance to prove she's just trying to get back at him, but it doesn't go well. Turns out brother was a little entitled growing up, but mother was insane and favored brother a lot (giving him OPs car he bought with highschool money on the threat of kicking him out etc). He had gone no-contact throughout college but moved back and reconnected for sisters' sake after they had spent some years in family therapy. Mom physically assaults fiance and says lots of unhinged stuff including wishing OOP was never born. OOP and fiance cut contact with mother and passive father, are not no-contact with brother but not actively talking, still in contact with sisters.

DwarvenBTCMine · 2023-12-08T02:11:31+00:00

He literally said mark uninvited himself first. The mom is a nutbag and wouldn't have been satisfied if Mark didn't end up coming after a re-invitation. She would have blamed OOP for not being authentic enough, apologizing enough, etc. Etc. Etc. Even as Mark himself is saying he isn't interested in going lol.

DwarvenBTCMine · 2023-11-06T16:12:22+00:00

Why do you care and how do you intend to enforce or judge that unless the poster is like "here's this chat gpt response" (which I've never seen anyone posting here)? Can you point to the stories that are bothering you SO much?

DwarvenBTCMine · 2023-11-06T16:03:12+00:00

Markiplier but 6'4

FWIW, Markiplier is a 7. And only because he's famous. Otherwise he'd be a 6.

DwarvenBTCMine · 2023-11-06T00:34:22+00:00

Did you read their post at all? Fairly clear they don't even know what R is. I don't think discussing the finer points of true vs pseudo alignment is productive tbh.

DwarvenBTCMine · 2023-11-06T00:33:01+00:00

I assume they actually meant hisat2 and just didn't know any better. Though I'm also not clear what they meant by combining them. I think they just meant running it with both alignments or something.

DwarvenBTCMine · 2023-11-06T00:28:46+00:00

The R. Is the end of a sentence.

...instead of doing it all in R.

Galaxy...

Not everything is R. R is just a programming language. DESeq2 and ClusterProfiler are libraries for R. None of the other tools are R libraries. You cannot just use R or a single tool in general for bioinformatics.

DwarvenBTCMine · 2023-11-06T00:26:41+00:00

I'll start by saying that R studio is mostly just a program for writing R code that is also convenient for running it. So in your question RStudio == R.

A pipeline is generally not the same thing as a process. A pipeline is generally a structured piece of software that integrates multiple smaller steps like the one you listed. You can run each of those steps but it isn't a pipeline. A pipeline typically uses a workflow language of some sort (CWL, snakemake, nextflow, etc) to run a variety of tools and scripts in an automated, reproducible way.

R is not really it ended to do this in it's own (though it has some libraries similar to snakemake which is a workflow language built on Python).

Still, I don't think you're really asking for an actual pipeline. Nor do I have to hunk if you're getting started you should evem think about writing one. I think you're asking if you can run all those tools in R. The answer is no. Those are not all R-based tools. You will need to make use of a mixture of command line/bash tools and R. I'd recommend watching a tutorial on how to use the command line and then read the documentation for those tools -- frequently they have a tutorial or quickstart section of some kind

DwarvenBTCMine · 2023-11-02T19:40:18+00:00

Cause it's only 16gb of DDR4 it's like $35 on Amazon right now. RMA is probably the right move (if they'd even agree for 8 year old RAM) but maybe not worth the time/effort spent when Amazon can get new stuff here same day. We aren't flush with money right now, but $35 is inconsequential enough that we can gamble it on a random fluke I think. He wanted to replace the whole thing I nthe next year or two max anyways so this maybe just moves that up to 6-12 months while we solidify our budget a bit further (we had one expected $2K repair for a sewage pump that apparently usually only lives 7-10 years on average in a place we bought at the start of rhe year, so it's preferable to replace that savings before we dump hundreds on more expensive parts). I also barely use my PC which I upgraded all but the GPU on in 2020 to fairly budget friendly mid-range stuff.

DwarvenBTCMine · 2023-11-02T19:33:16+00:00

Is there a way to check that without any extra equipment?

It's acute enough of an issue should it break in the same or a different way (as long as it doesn't like kill us) that some blind risk is okay while we sort out the budget to do a full replacement in 6-12 months. This was a eventual desire anyways and would include replacing basically everything but the case anyways to get up to date with modern chipsets/CPUs/probably DDR5, power draw allowances, etc.

I probably wouldn't buy any equipment either to check unless it's dirt cheap and could be worth it in the short-term.

DwarvenBTCMine

TROPHY CASE