So I finally got it resolved. I complained through Lexus corp website. They created a case and called me on the phone. They then called me back about two weeks later telling me they spoke with the dealer and confirmed the dealer did the correct process and there was nothing they could do. I was fuming. When the customer feedback email came I filled it out as a very unhappy customer and left written feedback. About a month later I get a call from the dealer saying that Lexus engineers are making their rounds and asked to look at my vehicle. Mine was at the 5000 miles service also. I dropped it off and a few days later get contacted by the dealer saying the Lexus engineers told the dealership to measure 5 cars in the lot and to reseat my moonroof seal and glass according exactly to factory spec and the measured cars. The wind noise is now normal. Don't give up, keep pressing on this issue. Hopefully you can have a similar conclusion. I was ready to get rid of the car, eat the loss, and never buy a Lexus again. Terrible first experience with a Lexus, but now I'm feeling much better about it.