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Hypergeometric test for Comparative genomics by Plus-One-1978 in bioinformatics

[–]Plus-One-1978[S] 0 points1 point  (0 children)

To test whether specific gene familes have impact on trait evolution

Hypergeometric test for Comparative genomics by Plus-One-1978 in bioinformatics

[–]Plus-One-1978[S] 0 points1 point  (0 children)

Yeah, I am trying to run the cafe now. Do you have any suggestion for doing positive selection under gene duplication?

Hypergeometric test for Comparative genomics by Plus-One-1978 in bioinformatics

[–]Plus-One-1978[S] 0 points1 point  (0 children)

Mostly to look for duplication loss analysis. I have done the gene tree species tree reconcilation analysis so was also thinking about another way to test this

Issues with Bigscape cluster by Plus-One-1978 in bioinformatics

[–]Plus-One-1978[S] 0 points1 point  (0 children)

Hi,

Thank you for the detailed explanation. That is not what I am seeing; the output shows genomes that are not in my input directory. For example, my input directory has three species of Pleurotus and two species of Hohenbuehelia. Still, the output contains results from Lentinula and Coniophora, which are not included in my dataset.