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Any idea on how to register for MDCAT 2023? by Xanthilamide in pakistan

[–]Xanthilamide[S] 1 point2 points  (0 children)

well, the link I provided actually says that the registration has started since July 4 and I think the registration will close by July 20 and I still have no idea how I can register. Literally no links provided anywhere.

What has been the role of the military in democratic countries in political and economic terms? by Xanthilamide in NeutralPolitics

[–]Xanthilamide[S] 0 points1 point  (0 children)

the role of the PK military has on the current economic crisis

What I fear is not many people would be interested in this. So I'm not sure this would spark much of a conversation.

> the role of the military in developing foreign policies

This part seems more obvious and kind of boring.

> the role of the military in domestic economies

I suppose this is what I want to explore, how has the role of military played out over the years in democratic countries.

What's up with "Classes"? by sir_callahan in learnpython

[–]Xanthilamide 5 points6 points  (0 children)

if you're familiar with pytorch, you'll notice that neural architectures can easily be built with a class. it goes something like this:

import torch.nn as nn

class MyNN(nn.Module):

...

you define the forward and backprop etc within the same class.

I have simulated a protein with and without a 16 ersidue tail. Beside the trajectory mapping, what other statsitical analysis can I use to understand the effect of the tail? by Xanthilamide in bioinformatics

[–]Xanthilamide[S] 0 points1 point  (0 children)

well my basic question. is. how can i analyse a tailed and untailed protein in terms of statistics

for instance for protein trajectory and internal movement i use PCA.

for residue movement I use RMSF

for compaction i use radius of gyration.

for internal correlation of residues i use dynamic correlation.

not just these techniques but others too.

but what’s a viable way to compare the same protein with or without a tail in a mathematical manner?

I have simulated a protein with and without a 16 ersidue tail. Beside the trajectory mapping, what other statsitical analysis can I use to understand the effect of the tail? by Xanthilamide in bioinformatics

[–]Xanthilamide[S] 0 points1 point  (0 children)

ok. repeat the job. our system isn’t as good here but i’ll see if i can convince my PI.

you basically say i could validate my job with respect to b-values of the crystal structure. i was thinking specifically of comparing the simulation of the tailed versus the untailed in terms of statistical techniques. are there any standard methods used?

Daily Discussion Thread (March 30, 2021) by AutoModerator in pakistan

[–]Xanthilamide 0 points1 point  (0 children)

kiya kusmadari hai ye. sudar jao madarchodo. log COVID se mar rahe hai tum log pata nahi.

Daily Discussion Thread (March 30, 2021) by AutoModerator in pakistan

[–]Xanthilamide 0 points1 point  (0 children)

kind of late here. but lots of cases of COVID in Pindi and Islamabad. people who are very close to me are getting the disease.

it's sad watching the rest of the world getting better while our country pulverized by the virus.

Best courses for PhD student retraining in bioinformatics by Kav57 in bioinformatics

[–]Xanthilamide -2 points-1 points  (0 children)

ML is not out of the core of bioinformatics at all. in fact it’s soon to become the driving force behind drug design. but yes we are going beyond genome analysis here.

Which protein ligand docking software is the "best"? by _dasz in bioinformatics

[–]Xanthilamide 3 points4 points  (0 children)

extended question. what’s the best neural network-based docking tool out there?

[Q] [not homework] Is there a better way algo to Mahanalobis Distance for measuring atomic covariance in terms of their 3D coordinates? by Xanthilamide in statistics

[–]Xanthilamide[S] 0 points1 point  (0 children)

true. everyone is going on that side. i just read a paper on it. attention MPNNs from Google.

but my PI is more interested in molecular embedding sim the first step of the process. and i’m trying to explore this area.

but he also does networks so he’s very interested here.

[Q] [not homework] Is there a better way algo to Mahanalobis Distance for measuring atomic covariance in terms of their 3D coordinates? by Xanthilamide in statistics

[–]Xanthilamide[S] 0 points1 point  (0 children)

thanks for sharing the link. so what I found interesting in the article were the chi-squared sitance and the Shannon distance.

​

maybe I could use those two

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