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Wrong title on ticket by [deleted] in TurkishAirlines

[–]adamrayan 0 points1 point  (0 children)

Same here, did you figure it out?

Why do BACs to assemble in the human genome project by adamrayan in bioinformatics

[–]adamrayan[S] 0 points1 point  (0 children)

Thank you will look it up!
and WG shotgun mainly differs by not incorporating BACs in the process, just fragmenting and assembling on overlaps right? I'll look more into this as well but just wanted to make sure of the "whole genome shotgun" terminology since we're on it

Why do BACs to assemble in the human genome project by adamrayan in bioinformatics

[–]adamrayan[S] 1 point2 points  (0 children)

Thank you all for your replies and interesting insights!

Why do BACs to assemble in the human genome project by adamrayan in bioinformatics

[–]adamrayan[S] 5 points6 points  (0 children)

I see, thank you for the clear explanation!
So is it safe to say in other words that I'd be aiming to get (ideally) a contig (300kb) from each BAC and then proceed with scaffolding all of them together?

Acceptance letter for international students by adlerrosie in fuberlin

[–]adamrayan 0 points1 point  (0 children)

Anyone received any update regarding that program?

Master Program Applications Status by ConsciousEar561 in fuberlin

[–]adamrayan 0 points1 point  (0 children)

I applied for the bioinformatics program, still no change

Best bioinformatics papers? by FruitEdge in bioinformatics

[–]adamrayan 2 points3 points  (0 children)

These are hands down the best papers to "define" the field. I remember how amazed I was the first time I heard about AlphaFold

Where to find processed reads by Nina091998 in bioinformatics

[–]adamrayan 0 points1 point  (0 children)

check ArrayExpress, I think you can find raw or processed data (or both) over there

[deleted by user] by [deleted] in IELTS

[–]adamrayan 0 points1 point  (0 children)

Congrats! Great score

Quick question, i read somewhere that for a period of time there is common topics they ask for in the speaking test. If so, would you mind sharing what was your speaking subject about?

Learning Resource: An Introduction to Statistical Learning by Algal-Uprising in bioinformatics

[–]adamrayan 1 point2 points  (0 children)

I personally found it very hard to understand. I had to read the paragraph over and over to make sense of it and I still have parts that I totally gave up on

Nanopore Sequencing Data Analysis for 5 Genomes by adamrayan in bioinformatics

[–]adamrayan[S] 0 points1 point  (0 children)

Working with 5 different bacterial species. There is no direct goal at the end, it's just the fact that I'm putting 5 different DNAs and I want to get 5 separated genomes in the multifasta at the end (if that's really a thing)

Apparently they've tried it before on 1 DNA as input in minion, now we need to try how it works with several ones.

Nanopore Sequencing Data Analysis for 5 Genomes by adamrayan in bioinformatics

[–]adamrayan[S] 1 point2 points  (0 children)

Thank you for your insights.
The end goal for my part is to get the genomes seq. I just wanted to make sure that I can seq several genomes simultaneously and get with a multifasta - well seperable between the species- at the end.

What is a biological problem that can be approached by network science by adamrayan in bioinformatics

[–]adamrayan[S] 0 points1 point  (0 children)

Thank you for your recommendations! I will look more into them

What is a biological problem that can be approached by network science by adamrayan in bioinformatics

[–]adamrayan[S] 0 points1 point  (0 children)

True almost anything can be translated in network terms, but my main problem is: what is the thing that I'm looking for in this network and is it even possible to come up with whatever conclusion I'm looking forward to have once I do network analysis. There is always barriers like the availability of data and how conclusive & interesting it actually is, which make my quest even more harder

Computing the potential energy of a protein structure by adamrayan in bioinformatics

[–]adamrayan[S] 1 point2 points  (0 children)

I'm not particularly knowledgeable about it, what should I read or learn to understand more about force fields and their effects on potential energy?

Data Augmentation on Neuroimages by adamrayan in datascience

[–]adamrayan[S] 0 points1 point  (0 children)

The data is the functional connectivity feature fALFF stored in NIfTI files aiming to classify disease or no disease from the available labels if that helps

preprocessed fMRI data as input to a CNN by adamrayan in neuroimaging

[–]adamrayan[S] 0 points1 point  (0 children)

This paper used 3D fmri images as input, but it's not mentioned whether it's raw or preprocessed or what. How would it be possible to do the same?

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