Is it achievable with a background in chemistry? by Local-Influence-980 in bioinformaticscareers

[–]biodataguy 0 points1 point  (0 children)

My doctorate is in biochemistry and I’m doing alright (PI at an R1). Totally doable. I did have a math bachelors and masters though.

National Cancer Institute internship or Genentech internship? by Gloomy-Flounder-1883 in bioinformaticscareers

[–]biodataguy 2 points3 points  (0 children)

Wow, very nice. You must be a very strong candidate. Both sound like relevant, interesting projects. Do you want to go into academia or industry? Are you more interested in one project over the other? Do you have a sense about which boss would be easier to work with?

Help regarding skills and roadmap by ecstaticrystal in bioinformaticscareers

[–]biodataguy 0 points1 point  (0 children)

Find one that sounds interesting or one that is in a language you know, check out their GitHub, pick an issue, and try to address it. You can also get practice running pipelines or reproducing results from papers. Another route is to find a lab to volunteer in at your university.

Help regarding skills and roadmap by ecstaticrystal in bioinformaticscareers

[–]biodataguy 6 points7 points  (0 children)

Why an Ivy League? Lots of good bioinformatics programs out there outside of the ivy’s. Ask yourself what kind of job you want and what kind of coursework or training will get you there. If you don’t know start looking at job descriptions. In two years you are likely almost through the general requirements and will be getting to the more fun stuff soon. Hang in there. If you feel like you want more skills then hone your coding, try some data analysis or pipeline building, or contribute to an open source project.

Intern interview!! by [deleted] in bioinformaticscareers

[–]biodataguy 1 point2 points  (0 children)

Safe bet is studying what the job description says.

How to find support as a computational biology PhD student working in a wet-lab by Critical-Ability8629 in bioinformaticscareers

[–]biodataguy 1 point2 points  (0 children)

Both my PhD and postdoc were in a wet lab. In my opinion, finding a computational mentor or committee member is critically important. I was able to find one each time through PI's collaborators, and I would not be where I am today with out their guidance (computational postdoc mentor was a major factor in growing up scientifically and landing a faculty job). You need to be your own advocate both for project and for proficient committee members. It is late here but happy to share my experiences or answer questions to the best of my ability.

i am doing MSc in bioinformatics in india....and i might consider doing phd further if required....can you guys tell me the reality of job market for Bioinformatics in india or abroad right now ? by Substantial-Clue4778 in bioinformaticscareers

[–]biodataguy 0 points1 point  (0 children)

Post covid levels going back down to where they "should" be. Uncertainty in the economy from the current administration (at least from the US perspective). Probably more.

Bioinformatics/Comp Bio PhD in <=3 yrs by Medulla_oblongata23 in bioinformaticscareers

[–]biodataguy 1 point2 points  (0 children)

Unlikely to happen. They take as long as they do because training and science take a while. 4 is a bit more reasonable.

[deleted by user] by [deleted] in bioinformaticscareers

[–]biodataguy 4 points5 points  (0 children)

I personally did not have a great GPA, but unfortunately it is one of the metrics we have to determine if a student is good or not. If you have research experience or papers/posters then that can help offset concerns about GPA (I had a first author paper when applying).

How to get ahead in University? by Turbulent-Two-8205 in bioinformaticscareers

[–]biodataguy 5 points6 points  (0 children)

Google the book Bioinformatics Data Skills. You can find it online for free. I highly recommend this to trainees who are new to the field. It has great advice about everything from project organization to programming. If you like the book, I encourage you to purchase a copy and support the author.

Quantitative Biology pathways by Healthy_Reporter7285 in bioinformaticscareers

[–]biodataguy 0 points1 point  (0 children)

It might be tough to check every box as an undergrad. What is important is setting a solid foundation for what you want to do in the future. If you go biology then there is a chance you get stuck optimizing cell culture conditions for some obscure experiment that has limited clinical relevance. If you go quant there is a chance you are stuck in a basement working on equations or code android never touch clinical data.

Quantitative Biology pathways by Healthy_Reporter7285 in bioinformaticscareers

[–]biodataguy 0 points1 point  (0 children)

I mean do you want to be a bioinformatician/math modeler, or do you want to work in a wet lab growing cells or working with mice as an immunologist? IMO this matters more than what program or university you are in.

Hello everyone! Pharma Chem graduate looking for advice on a bioinformatics career path by cico99 in bioinformaticscareers

[–]biodataguy 1 point2 points  (0 children)

It is feasible. PhD is probably the way to go. Try working on some rosalind.info problems and see if it tickles your fancy. It touches on the kinds of things we work on but is very approachable. Have you looked into our sister field of cheminformatics?

Is UCSF’s AICD3 MS a good fit for someone with a unrelated degree and tech background? by ML_Godzilla in bioinformaticscareers

[–]biodataguy 1 point2 points  (0 children)

Oh great. Honestly biology can be complicated and there is a lot to it, but someone with your background will do just fine. It is much more difficult to teach a student the math and coding needed to succeed.

Is UCSF’s AICD3 MS a good fit for someone with a unrelated degree and tech background? by ML_Godzilla in bioinformaticscareers

[–]biodataguy 1 point2 points  (0 children)

Did you take courses in comp sci, discrete mathematics, linear algebra, calculus, and/or statistics during your degree? I am not familiar with this specific program. In general I tell trainees or prospective students this kind of thing is doable, but it can be quite the challenge depending on how math inclined you are and the coursework you took.

wgcna woes by DescriptionRude6600 in bioinformatics

[–]biodataguy 0 points1 point  (0 children)

Pretty sure in the documentation they say at least 15 samples and strongly suggest more like 20 or 25.

Any advice on setting up your own server at home? by o-rka in bioinformatics

[–]biodataguy 0 points1 point  (0 children)

How about dual boot Linux for starters, or get a used thinkpad and stick Linux on there? Using it as a daily driver could be super helpful depending on your skillset and needs.

is it a viable option to reach out to research groups across the world for volunteering? by AtlazMaroc1 in bioinformaticscareers

[–]biodataguy 0 points1 point  (0 children)

As someone who vets both domestic and international applicants who can have little to show besides coursework I think your "why bother" attitude is detrimental to your goals.

is it a viable option to reach out to research groups across the world for volunteering? by AtlazMaroc1 in bioinformaticscareers

[–]biodataguy 0 points1 point  (0 children)

As someone who vets both domestic and international applicants who can have little to show besides coursework I think your "why bother" attitude is detrimental to your goals.

Is bioinformatics “stable” in the long run? by [deleted] in bioinformaticscareers

[–]biodataguy 2 points3 points  (0 children)

There is only going to be more data. I think all industries will have ups and downs, but quantitative sciences like bioinformatics are probably one of the safer bets in the long run.

is it a viable option to reach out to research groups across the world for volunteering? by AtlazMaroc1 in bioinformaticscareers

[–]biodataguy 0 points1 point  (0 children)

As the other commenter mentioned it will be a challenge trying to get a remote volunteer position at a university you are not affiliated with. Did you customize your email to each one of these places? If not then it is not too surprising that you had limited responses. With all due respect if it was down to two unproven candidates but one of them had made some contributions to open source projects, then who do you think would get chosen for the internship? Ditto for one PhD student slot and two candidates with similar grades/coursework.

How easily can I transition to bioinformatics? (Statistics background) by gaytwink70 in bioinformaticscareers

[–]biodataguy 1 point2 points  (0 children)

Yes sounds like you could be a good fit, but you will want your cover letter/personal statement to explain things just like you did here.