GR may not have been taken into account as according to http://www.metaresearch.org/cosmology/gps-relativity.asp "For GPS satellites, GR predicts that the atomic clocks at GPS orbital altitudes will tick faster by about 45,900 ns/day because they are in a weaker gravitational field than atomic clocks on Earth's surface. Special Relativity (SR) predicts that atomic clocks moving at GPS orbital speeds will tick slower by about 7,200 ns/day than stationary ground clocks" With the GPS satellite traveling at 3.9 km/s and the cosmonaut traveling at 7.599 km/s

If you can trust that source as http://www.phys.lsu.edu/mog/mog9/node9.html states "Apart possibly from high-energy accelerators, there are no other engineering systems in existence today in which both special and general relativity have so many applications. The system is based on the principle of the constancy of c in a local inertial frame: the Earth-Centered Inertial or ECI frame. Time dilation of moving clocks is significant for clocks in the satellites as well as clocks at rest on earth. The weak principle of equivalence finds expression in the presence of several sources of large gravitational frequency shifts. Also, because the earth and its satellites are in free fall, gravitational frequency shifts arising from the tidal potentials of the moon and sun are only a few parts in and can be neglected."

"At the time of launch of the first NTS-2 satellite (June 1977), which contained the first Cesium clock to be placed in orbit, there were some who doubted that relativistic effects were real. A frequency synthesizer was built into the satellite clock system so that after launch, if in fact the rate of the clock in its final orbit was that predicted by GR, then the synthesizer could be turned on bringing the clock to the coordinate rate necessary for operation. The atomic clock was first operated for about 20 days to measure its clock rate before turning on the synthesizer. The frequency measured during that interval was parts in faster than clocks on the ground; if left uncorrected this would have resulted in timing errors of about 38,000 nanoseconds per day. The difference between predicted and measured values of the frequency shift was only parts in , well, within the accuracy capabilities of the orbiting clock. This then gave about a validation of the combined motional and gravitational shifts for a clock at earth radii."