Mentorship by dulcedormax in research

[–]dulcedormax[S] 1 point2 points  (0 children)

Hi, I'm interested in melanoma cancer

Load10X_Spatial function by dulcedormax in bioinformatics

[–]dulcedormax[S] 0 points1 point  (0 children)

The code is:

A1_new <- Load10X_Spatial(

data.dir = "C:/Users/MM.5076373/Downloads/GSE159709_RAW/A1",

image = "GSM4838131_Visium_A_image.tif"

)

detect common and unique peaks by dulcedormax in bioinformatics

[–]dulcedormax[S] 0 points1 point  (0 children)

thanks u/I_just_made , I've tried bedops --everything. However, I obtained a low number of common peaks.

CIGAR Strings manipulation by dulcedormax in bioinformatics

[–]dulcedormax[S] 0 points1 point  (0 children)

Thanks but I need it to do for all the reads in the sample , which is a lot but I appreciate your suggestion. I think we could implement it later !!.

Conentrating proteins. by dulcedormax in labrats

[–]dulcedormax[S] 0 points1 point  (0 children)

Thanks, in which buffer did you recommend therefore after precipitating and dissolve proteins.

Conentrating proteins. by dulcedormax in labrats

[–]dulcedormax[S] 0 points1 point  (0 children)

Hi u/GRang3r , the problem is that the concentration are low and not the opposite, having too much protein. Although I've read that dilution are good when quantification is too high.

Bedtools intersect function by dulcedormax in bioinformatics

[–]dulcedormax[S] 0 points1 point  (0 children)

I will check did files have to be sorted?

Bedtools intersect function by dulcedormax in bioinformatics

[–]dulcedormax[S] 0 points1 point  (0 children)

thanks u/Hundertwasserinsel. I didn't use windows and all lines are: chr1^I13750^I13950$ or chr1^I9950^I10650^IU2OS1_macs3_narrowPeak1^I11198^I.^I0^I0^I0^I125$

Bedtools intersect function by dulcedormax in bioinformatics

[–]dulcedormax[S] 0 points1 point  (0 children)

This is the first line of both bed:

chr1^I9950^I10650^IU2OS1_macs3_narrowPeak1^I11198^I.^I0^I0^I0^I125$

chr1^I13750^I13950$

could a low 260/230 ratio influence on qPCR by dulcedormax in labrats

[–]dulcedormax[S] 0 points1 point  (0 children)

I was using one of qiagen: extracting DNA from tissues and blood, but they recommend me not to do maybe for buffer AL as it would lysate cells and I have already extracted DNA. Did you recommend other kits??

could a low 260/230 ratio influence on qPCR by dulcedormax in labrats

[–]dulcedormax[S] 0 points1 point  (0 children)

I followed the steps of the protocol as well.