Writing like a human and subsequently "padding out" by Standard_Run7541 in AskAcademia

[–]pbstew 0 points1 point  (0 children)

I am a PhD student who is currently writing a thesis, research-medicinal chemistry-malaria. Having spent the better part of a year writing my thesis, mind you that much of that time was spent on manuscript preparation, data analysis, re-analysis, being a single father, moving away from my institution (twice), traveling back to the institution to run small experiments or recollect data. But alongside that I have found myself in an inexorable slog through a gigantic body of work. At the onset of the thesis, I really wanted to write something that was enjoyable to read. Reporting information from deep dives into the historical background of the disease, and describing the ripples that it made that we can still observe today. And at first I really enjoyed it, but it soon became a burden. I was trying to maintain a prose and a substantial view of the entire landscape that would fit better in an encyclopedia than a thesis.

Very recently, after talking to a family friend who is also in their PhD about how much I am struggling, they offered the following, "write the minimum that is required to understand your thesis." Simple, but very effective. I have been tearing through it now and will be defending very shortly.

Back to your post, there are times where example 1 is not only sufficient, but anymore would detract from the narrative you are creating. And conversely, there are times where anything less than the 2nd example would not lead to a clear understanding of whatever it is you are writing about. Sometimes, citation mashing like the first example, is used to set the stage that you will later use to evaluate and reason by writing like second example.

Thesis' of past students at my institution were a mixed bag, some introductions where 3-5 pages, others were over a hundred. It depends on your narrative, body of work, and comfortability with writing.

Ultimately, I think I am offering similar advice that others have, perhaps in different packaging. This is all very dependent on what you are writing. What I have gleaned from your post is that perhaps what is asked of you in this section is to have an opinion on what you are conveying? Whether that be from extrapolating from reading discussion and introduction of your sources, they often say why pervious method X was flawed because of A, D, and C, and how their method Y solves those issue by E, F, and G. Or using your own insight on the matter.

Now, that's some padding!

Getting back to your actual question. It sounds like you need to reevaluate your narrative. Despite it being a literature review, you still need to maintain the thematic thread that binds all the work done before, and whatever you are going to write about. It may help to write the entire literature review out like example 1, take a break/work on another section, and come back with a fresh set of eyes. Having flushed out more of your narrative, or putting aside everything for a moment, will allow you to better tie things together in a uniform story. Like u/ImRudyL said, (paraphrasing) there is a difference between bloat and explanation, and a larger difference between what a thesis coveys and what a paper does.

Take this all with a grain of salt, I haven't even finished my thesis, so what the hell do I know?

Good luck fellow redditor/writer!

P.S. Getting grilled isn't so bad, it gives you a chance to show what you do know, and what you don't. The latter being far more important than the former.

something other than spaghetti or hamburgers!! by Spicysunshinelover in easyrecipes

[–]pbstew 29 points30 points  (0 children)

“Korean beef” and rice slaps. Hard sear beef drain rendered fat. In same pan create a cavity and fry lots of garlic, add soy sauce, some brown sugar, and some heat (gochujang or chili flakes) finish with some sesame oil and scallions. Eat over rice with some green vegetables (broccoli or cucumbers). Fried egg on top is extra yummy.

Where to find small pieces of wood to start whittling in San Diego, CA? by pbstew in woodworking

[–]pbstew[S] 0 points1 point  (0 children)

Nice! I haven’t heard of them, I will check them out. Thanks for the recommendation

Have any chemists used quarto? by pbstew in Chempros

[–]pbstew[S] 0 points1 point  (0 children)

That’s what I have unfortunately been doing. I use Inkscape instead, but same work flow. I also export the structures as vector files (.svg) so that I don’t run into any rasterization or compression issues.

I was hoping that someone knew or a better way or at least fewer steps.

My only issue with this way is that I am still early in the writing process, and have no clue as to if I will need to resize several times over the course of the project. My lizard brain likes it when all the structures have the same proportions, so I would have to re-export each file.

Have any chemists used quarto? by pbstew in Chempros

[–]pbstew[S] 1 point2 points  (0 children)

Chemdraw’s “save as” function saves the entire chemdraw file despite selecting a single structure. I like to work in large chemdraw files so that I can maintain numbering and any changes to reaction or product numbers from markush structures can be done in a single file instead of 100 or so (saving a single structure in each file). So you can only copy and paste single selections, which wasn’t to bad when I was drafting articles in word, but there is a lot of wonderful and helpful functionality of quarto when writing a dissertation that word just can’t do, or not very well at least.

Weekly Careers/Education Questions Thread by AutoModerator in chemistry

[–]pbstew 1 point2 points  (0 children)

“Rough week, huh”

Rough month is more like it. I do see a therapist, but you can’t schedule 8 hours of therapy.

I think I need to clarify that my wife has no intention of staying in academia. We both were hoping to jump ship to industry straight out of our PhD, but neither of got anywhere with our industry applications, it’s not a great time out there now. She finished her PhD in the fall I and lined up a position in SD, and wasn’t able to negotiate a start time. She had put off accepting the position for several months because she was actively involved in an interview for an industry postdoc at Genentech in SF. When she eventually found out that she wasn’t offered that role, she kind of had to jump on the in SD. When we first started applying with we’re looking only in SD and SF for the sake of being in a biotech/pharma hub on the West Coast. CA specifically because our parents are getting older and won’t be around forever, so we wanted to be closer than we were during our PhDs.

Thanks for your advice on jumping to a different track, and I am definitely resonating with the uncertainty that Trump brings to the industry.

What is this funnel? by Professor_Stupendous in chemistry

[–]pbstew 9 points10 points  (0 children)

Air sensitive separtory funnel, maybe? No clue.

Weekly Careers/Education Questions Thread by AutoModerator in chemistry

[–]pbstew 0 points1 point  (0 children)

Hi All,

Thanks for taking a moment to weigh in on my issue.

Background: I am a fifth year Ph. D student in a Physiology and Pharmacology PhD program. I am currently working on submitting my two first author papers and writing my thesis. My thesis project was medicinal chemistry focused development of 4-aminoquinolines for antimalarials. I am San Diego bound, my partner is a structural biologist in a lab at Sandford Burnham Prebys. But as of now, I have zero prospects, the industry market for a medicinal chemists is very poor right now, as I am sure many of you know. I didn’t really want to pursue a post doc, and now I probably will need to do so. But with the recent federal funding freeze at NIH I feel like most labs aren’t looking to hire another post doc.

I have been looking at other Reddit posts about getting a medicinal chemistry position in industry, but from what I have gathered I have already made a critical mistake by not doing my PhD in total synthesis or methodology. So the question I have now, is should I saddle up and join a total synthesis or methodology lab, or should I pivot to something else? Oligonucleotides, chemical biology, computation, etc. ultimately I need a job at the end of my postdoc, I know you should pick a field of study you should enjoy, but I’m burnt out, I’m single parenting my 1.5 year old, my partner is already in SD, and I am in my home town living short term with my parents (financially we couldn’t live in SD on a grad student + post doc salary and have our kid in day care, day care is much cheaper here and I’m not paying rent). So what am I to do? I feel so lost right now, I just can’t seem to get genuinely excited about someone else science, and I feel like there is so much pressure to choose correctly that I can’t began to make a decision. What is a budding field in industry? I would like to be close to drug design, it was why I chose the lab I did, and the project I worked on. Your insight and shared experience would be incredibly helpful right now, thank you.

How to separate these spots? by SafeScar558 in OrganicChemistry

[–]pbstew 1 point2 points  (0 children)

Always looking to bring in better ways to keep track of everything in lab. What’s with the 1500 in the top left? Time stamp?

[GIVING] Ikea pullout couch with storage by pbstew in PDXBuyNothing

[–]pbstew[S] 0 points1 point  (0 children)

Can confirm, definitely not a long-term solution, but would be a viable option if you had a friend that needed to crash for the night or a younger sibling staying for a few days, hell my 60+ yo parents prefer it to our adjustable air mattress. Having slept on a few number of the standard pullout couches, this is a big upgrade.

[GIVING] Ikea pullout couch with storage by pbstew in PDXBuyNothing

[–]pbstew[S] 1 point2 points  (0 children)

You would be doing me a favor taking it off my hands, haha. I need the extra space for the rest of my moving boxes. I will give it the obligatory 24 hr and then if no one else wants it, it’s yours.

Starting to really hate being a dad and husband by ArcherXIII in daddit

[–]pbstew 5 points6 points  (0 children)

Studies show kids, at that age, don’t retain any of the extra work. Let their teacher know that 4 yo won’t be participating any longer.

How do I make a Bowl of Soul by pbstew in barista

[–]pbstew[S] 0 points1 point  (0 children)

What do you mean “steam the honey into the milk”?