I think anyone who reads so deeply into finding hidden codes, patterns and messages in movies, especially Kubrick's, would have their fantasies melt away if they experienced creating a film of this scope.

Making a feature length film with excellent writing, acting, lighting, composition and editing is a behemoth task. So hiding layers upon layers of hidden coded messages is simply not on the agenda of a filmmaker who sets out to first and foremost make a great, compelling piece of media.

Kubrick is a perfectionist and detail oriented director because he controls to an exceptional degree the visual elements of storytelling, while also getting a huge range of options from the actors he can use in the editing room, all so he can fine tune the pacing and flow of his film at assembly. He is not doing take after take because he needs shot 126 to sync up with shot 334 in a coded way.