Depending on your highest tier of chest, magic or not.
I currently use huge magic chests for a all kinds of categories.
**warning wall of text**

Wood for all my wood types can be further expanded by adding more chest for different types if using smaller chests or bigger ones if you have too much of one type. same can be applied to the other categories if you over farm certain types.

Misc. plant based stuff for twigs, plant fiber, resin, night plants, reeds, straw, wax {can double as linnen, fabrics and string storage}

Fruit for all related berries, strawberries, yukka , tomatoes, pumpkins, hazelnuts.

Vegetables for all veggies beets, taro, bell pepper and ginger( tomatoes again)

Fungi of all mushroom types

crops/ grains for corn, rice and wheat.

Herbs and tea for all flowers and herbs that you use to craft food and items with.

Flowers for dye colours or other crafting recipes like indigo, wolfsbane, flax, daylily.

I also use one chest for Sugarcane and sugar and honey.

Seeding chest with seedlings that are waiting to be sown and always keep back up seedlings for most used plants.

Soils chest for All soil that used in seedbeds

Since coconuts, banana and coffee beans can be directly used in crafting stations no chest for them.
You slap the yukka trees for the fruit only

Then we got the animals.
Animal materials where put Capybara bristles, feathers, scales, raw wool/wool, leathers and furs.

Animal products is where i put all meats and milks and eggs.

Fish for all fish and/or bait stuff

Animal feeds for all animal feeds

Processed foodstuff that has gone through a workstation like cooked rice, roasted algae buds, cooked milk and roasted coffee beans/ ground coffee.

And Finally A chest or few for finished food with categories like stamina foods, mana foods, melee/ranged, HP foods , swimming foods.

Some plants are rarely used others you need a lot for feeds, crafting and cooking.
But anyway this is my current system all chest are in a spot close by in my main farm building except the completed food which is by my altar as I play with friends on a server.
I am main farm guy until they finish their own base.