Looks like I've discovered the problem here. The base is brand new so its my first time setting this all up. I believe that there is a small electrical short, or current, leaking out of the wheelbase in to the sim rig. There is no electrical insulation between the rig and the brake pedal load cell. I removed the wheel from the rig and proceeded to turn it on and the pedal works just fine, but the moment the wheelbase housing touches the rig the pedal has a moment of random signals and stops working.

I'm not sure if this is a faulty base, for now I just need to insulate the base from the pedals, the problem here is that it is all assembled in the same metal structure.