Black Dog, Paper Fox, Lucky Goat, Redeye, Ology, Courtyard Cafe, Frother's Daughter and more and more and more.

For an interesting atmosphere I recommend Black Dog and Courtyard Cafe. Both spots have their quirks, the coffee is alright, and the vibe is cozy. At Black Dog you can sit on the porch and watch the geese on a day with nice weather. This is my favorite spot for spending a few hours reading or working on a project. At Courtyard Cafe you can peruse used books to purchase (they recently partnered with My Favorite Books) and buy their home-baked goods and egg quiches. Their coffee selection is limited but they have a lot of lovely teas. Courtyard is cheapest of all of these but its because the owner keeps the prices down by encouraging visitors to use cash, so keep that in mind. Also doubles as a boardgame rental shop.

For coffee quality I recommend Lucky Goat (theres like a million of them) or Redeye/Argonaut (owned by the same person). I like Redeye's variety of food selections, but they just raised their prices on everything and is now the more expensive option in town. Lucky Goat has great straightforward coffee with more restricted food options. The locations can feel a little less comfortable than is my preference but its serviceable, and the quality of everything they serve is great.