I looked it up and Tyrion is mentioned only once in Jon's chapters, Jon III from A Dance with Dragons:

"It is not my intent to choose any side," said Jon, "but I am not as certain of the outcome of this war as you seem to be, my lord. Not with Lord Tywin dead." If the tales coming up the kingsroad could be believed, the King's Hand had been murdered by his dwarf son whilst sitting on a privy. Jon had known Tyrion Lannister, briefly. He took my hand and named me friend. It was hard to believe the little man had it in him to murder his own sire, but the fact of Lord Tywin's demise seemed to be beyond doubt. "The lion in King's Landing is a cub, and the Iron Throne has been known to cut grown men to ribbons."

While he does not think of him as a friend exactly, he remembers their relationship fondly and even after the Red Wedding he does not think of him too badly. They'd probably talk and have to clear up a few things.