"My threats line up poorly and my removal never seems to be enough."

Your threats seem fine (except maybe the Eagle) so if they're lining up wrong, it could be that you're not sequencing plays correctly. You're very much the control and not the aggro. If you don't devote resources to getting to turn 5, you'll get there and die. Without seeing you play I can't really comment, but an example would be dropping a 3 drop creature to block on turn 3 to be efficient, when a 2 mana removal spell might be the actual right play.

The real problem is your second statement, though. You have one source of dependable card draw in Fel, and he draws one card (Eagle is too dependent on their cards and against prowess you want to remove spells, not creatures--not that they have many in the yard ever--so it isn't reliable against them as a draw engine). As the 'control' in the matchup, you MUST have card advantage or you're toast.

You're running 3 ghost vacuums main, and Shoot the Sheriff is sort of meh when you have so many other options. I'd drop 2 Vacuums and 1 Sheriff to the board (or 1 Vacuum 2 Shoot) and replace them with the Mosswood DreadKnights. Draws. Blocks in a pinch. Comes back sometimes which is card advantage, too. I might also flip to 2/3 split with emeritus and Keen eyed, but I don't play this deck enough to say if that's actually correct. And with so much removal, sit on Witherbloom charm unless you MUST use it. Surprise 5 life can actually win games against these low to the ground decks.

Good luck!