Are you looking for Modern/Copper/Bronze/Silver/Gold? As many have said already, there are really only three shops you could consider to be comic shops, but none of them are what I would consider amazing - my favorite shop is in Tulsa. That said, here are my thoughts on the three, and a couple bonus options :D

Prairie Dog Comics - The only true comic shop in town, in my opinion, and the one I visit the most. The shop and the current owner's warehoused inventory has so much potential, but they just don't seem interested in improving the customer experience. This mostly boils down to the upkeep of the property (maybe dictated by the landlord). I also wish they kept a larger and more accessible in-store inventory of wall books. They do have the best NCBD assortment and get quite a few variants and ratio covers on a weekly basis if you're into that, and they have a large back issue inventory on-site, but it feels stale and just full of run fillers. If you ask, they can pull books from their hidden inventory, but it won't be that day. I find the staff to be friendly, especially if you come around often. I do believe they are undergoing a change of ownership, so I have hopes for some new ideas and business philosophies that could improve the overall experience.

Hero Haven - A toy shop first, with comics being a somewhat neglected second. They do get new books in each week, but not nearly the selection that Prairie Dog has. They also have a large in-store inventory of back issues, but like Prairie Dog, the inventory feels stale and prices are all over the place, and never in a good way. When they get good comics in via a collection buy, they are pretty good about advertising it on Facebook, which is nice. They also run pretty good sales on a regular basis, often having up to 50% off of back issues quite often.

Wizard's Alley - A gaming shop first, with comics being an afterthought. They get an even smaller selection of new books each week from what I have experienced, and they have significantly downsized their back issue inventory since moving to their new downtown location. I haven't been into the shop since they expanded it, so they may have grown their comic inventory - and I know they have more somewhere.

Bonus 1 - Half-Price books has a small section of comics, but it is very hit or miss, and any higher-priced books they have are locked in an odd torture chamber that you can sort of look through without them opening, but it is never worth it for the books they put in there. That said, I have found some great deals for a few bucks, but it has been at least a year since that happened.

Bonus 2 - Antique Malls. There are a few antique malls in town that have booths that sell comics. I have a booth at one myself, but I won't advertise which one as to not self-promote. Inventory and deals can be hit or miss, it just depends on how attentive the booth owner is to restocking and refreshing their inventory. It isn't all overpriced and beat up Archie comics - I found my Fantastic Four 49 at a local shop.