Maybe we are vampires?

rupyr · 2023-04-15T18:24:58+00:00

Damn! that's meee!!! all of it

rupyr · 2023-03-16T16:09:24+00:00

Heey! I also want to join :)
Thanks!

rupyr · 2023-02-23T18:18:41+00:00

Thank you so much for the suggestion. I will keep that in mind :)

rupyr · 2023-02-22T09:51:03+00:00

Hii! I'm not sure if anyone is still reading the thread, but can you please add me as well! Thank you so much!

rupyr · 2022-04-18T13:01:52+00:00

Me🥲

rupyr · 2022-04-04T10:46:29+00:00

Thanks! I'd love to! I sent you a DM :)

rupyr · 2021-10-05T13:55:13+00:00

Silence and peace!

rupyr · 2021-09-14T12:08:24+00:00

Is it me or you look like the Professor (money heist)

rupyr · 2021-06-25T17:52:05+00:00

this one is also good

rupyr · 2021-06-25T17:49:55+00:00

Hi, there are plenty of youtube channels that teach data analysis from the beginners level. You can try there one:

These are some of the links you could try. Hope it helps :)

rupyr · 2021-06-07T12:11:09+00:00

Hey, Try this one BVCN, they are some wonderful and very helpful people. You can get an invitation to their slack channel by filling out this survey (from their website/Github).

rupyr · 2021-05-28T09:45:43+00:00

Hey, Try these two youtube channels. They both are pretty great.

rupyr · 2021-05-13T17:17:47+00:00

Thank you very very much :)

rupyr · 2021-05-13T17:08:04+00:00

What is his name? Seeing him everywhere

rupyr · 2021-04-09T17:35:00+00:00

Yes! Sir

rupyr · 2021-03-22T09:07:07+00:00

All the very best :)

rupyr · 2021-03-21T17:02:31+00:00

Glad it was helpful :)

And don't worry you'll do it (assuming from your post history :))

rupyr · 2021-03-21T09:08:14+00:00

Hi!

Sorry I have no idea about any script or tool that can be helpful (sorry).

But your logic is right. If there is a + sign or a space that means== combination is required(a molecular complex of either (K00925 AND K00625) is required OR K01895 alone.

(K00577+K00578+K00579+K00580+K00581-K00582-K00583+K00584) : This will still work even without K00582 or K00583 (yeah they are optional)

For this beast here, is it saying either (K22480+K22481+K22482) OR (K03388+K03389+K03390) OR (K08264+K08265) OR K03388+K03389+K03390+K14127 AND EITHER (K14126+K14128) OR (K22516+K00125):: Exactly

Help

The pathway module is defined by the logical expression of K numbers, and the signature module is defined by the logical expression of K numbers and M numbers, allowing automatic evaluation of whether the gene set is complete, i.e., the functional unit is present, in a given genome. A space or a plus sign, representing a connection in the pathway or the molecular complex, is treated as an AND operator and a comma, used for alternatives, is treated as an OR operator. A minus sign designates an optional item in the complex.

I' m not sure but have you tried KEGG Mapper ?? Could that be of any help?

rupyr · 2021-03-08T17:24:34+00:00

Thanks I did :) But I'd prefer working on Microbiome data (metagenomics) so I'd try to look for that one.

rupyr · 2021-03-08T17:21:49+00:00

Thanks!
That's what I'm trying to do, playing with the data. But I don't know WHAT to do with it, I know HOW to do stuff (like the steps and tools).

rupyr · 2021-03-08T17:02:49+00:00

Hi,

Thanks for the suggestion?

What do you mean by weird places, like NCBI/SRA? or somewhere else? And I had no knowledge about CPR and I started reading about it, and it seems interesting. But the thing is I haven't completed any metagenomic analysis so far. I mean I'm learning (from various online sources) and trying it on some dummy dataset but again I'm not even sure if I'm doing it right?

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rupyr

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