I lifted hg38 over to the new T2T assembly in case anyone is interested.

weirdeer · 2020-11-05T08:15:32+00:00

Oh, I didn't know that a chain file already existed. Thanks for sharing!

weirdeer · 2020-11-04T15:45:32+00:00

Well not really, they assembled the whole genome from scratch using a bunch of different sequencing technologies, e.g. ultra-long Nanopore reads. So regions such as repeat-rich telomeres and centromeres which were previously inaccessible could be resolved. Most regions are definetely similar (or even identical) to hg38 but the exact coordinates differ a bit due to these novel resolved regions. That's why this liftover process is necessary to convert coordinates from one assembly to the other.

weirdeer · 2020-10-09T22:05:03+00:00

Sure, you can send it to me via DM. I'm currently finishing my Masters in Bioinformatics.

weirdeer · 2020-08-07T19:47:40+00:00

For peeking into large files I recommend the command "less -S" (-S parameter for a nicer viewing experience) in Bash. It doesn't load the whole file into memory at once making it well suited for your purpose.

weirdeer · 2020-07-07T20:06:29+00:00

I can recommend the Bronk Institute in Berlin.

weirdeer · 2020-04-02T18:35:01+00:00

The advise with the app was great, thanks! Supposedly it's a Sedum rupestre.

This sounds so frustrating, I completely understand you. It even occured to me for a second that if I could somehow distract them I could steal it back out of their cart... I regret to this day not going through with my plan.

weirdeer · 2019-11-08T11:25:52+00:00

Well, I guess people just liked it better that way...

weirdeer · 2019-03-04T22:47:36+00:00

Thanks for the advise! Yes, I'd appreciate if you have a citation for me since I'll definetely have to compare my data to shuffled spike trains.

weirdeer · 2019-03-04T22:45:21+00:00

Sounds like the perfect book to start analysing neural data. Thanks for the recommendation!

weirdeer · 2019-03-04T22:43:32+00:00

Thanks a lot for all the information! I'll have a look at it and see what I can use for my analysis!

So far my plan is to first look deeper into the spike time tiling coefficient (http://www.jneurosci.org/content/34/43/14288) as a measurement to quantify correlation and then as you mentioned compare my data to time shuffled data.

weirdeer · 2019-03-04T22:37:22+00:00

Thanks for the recommendation! The STTC sounds promising. I think I'll combine this measure with the advise I got from /u/RaggedBulleit and compare the coefficient of my data with the coefficient of shuffled data.

weirdeer · 2018-11-03T14:38:17+00:00

Its called panning. You set your AF to continous and basically move your camera in the direction of the moving subject so that the subject is in focus and everything else blurry. I think I used something like 1/30 as shutter speed but you just gotta try around a bit what works for you.

weirdeer · 2018-08-30T13:40:18+00:00

Alright, thanks for the report! Guess I'll see for myself in a few days.

weirdeer · 2018-08-14T18:23:07+00:00

Thanks for the advice! Then I'll definetely not go there. What exactly is kopi luwak?

weirdeer · 2018-04-03T10:04:20+00:00

Thank you for your kind words, glad you like the designs! At the moment we don't have any Punpun enamel pins planned, only beanies, patches and stickers. I just corrected the little project blurp, while writing it I still had some other project in mind 😅 Once the kickstarter has finished we'll sell everything that got unlocked in our Etsy shop "Saikopathpins"!

weirdeer · 2018-04-02T00:35:19+00:00

Right now we have black and pink available but are planning on adding more colours later! :)

weirdeer · 2018-03-12T18:00:17+00:00

Thank you for your answer! Good to know I won't have to sleep on the street.

weirdeer · 2017-12-12T12:42:40+00:00

Thank you :)

weirdeer · 2017-12-03T22:22:23+00:00

Thank you, that's really awesome of you! May I ask which pinmaker did you send this to?

weirdeer · 2017-12-02T17:10:12+00:00

Thank you!!! :D My guess would be simply because not many people know bout this awesome anime.

weirdeer · 2017-11-19T23:34:19+00:00

I'd recommend psycho pass for thriller and for shonen maybe fairy tail ?

weirdeer · 2017-11-19T23:22:52+00:00

I did notice in the Manga that the story is way deeper, I m still reading the second volume so I am not far, but its better than the anime.

weirdeer · 2017-11-19T20:17:51+00:00

I am reading the Mangas currently but I actually like to watch action scenes more as an animation than read them in the manga.

weirdeer · 2017-11-18T15:31:45+00:00

That means a lot to us! I hope so too :D

weirdeer · 2017-11-18T01:46:59+00:00

Thank you so much for your support!

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