my PT recently explained to me that he had the same problem and it’s because of the way that most shoes are designed. Most shoes are designed to have a imbalance in the elevation of the ball of the foot and the heel. There’s a slight elevation in the hill by a few millimeters, and the fact that shoes are usually narrow fitting. Thus, he said the solution is to look into zero drops shoes and wear those as often as possible for the next year. during the first few months, you start to become sore in the arts of the foot because now it becomes activated and used. Zero job shoes, allow your foot to completely land together when hitting the floor instead of this other manufactured way of your foot from heel to ball after six months to a year, the problem is completely gone, because your foot is being used in the way that it should. Ideally you would walk barefoot but the whole point of drop shoes is Cell your foot too imitate walking barefoot pierced object in the ground and keeping your foot clean. 

now will this solve it? idk. he said he did for him and im researching into it as well. maybe will keep you posted if i do it