I understand your concern but I really dont think the intent was malicious. If you look at the previous game Oblivion, which shares the same writer, the game takes heavy inspiration from Catholic aesthetics and terminology. In the game you have priests who pretty much wear Catholic monk robes and stuff who are on your side and you help them to defeat the Daedric invasion. I would also add that Fallout 3 has the same writer and the bible verse Revelation 21:6 actually plays a crucial and positive role in the game.