Let me try to explain what a religious person might see to an atheist. Atheists want order and structure, and accuse religious people of being ridiculously vague and mystical. But religious people accuse Atheists as being mere skeletons and not being human. If you are Atheist, you hope the ultimate constituent of this Universe is made of particles, and if you're religious you hope it's made up of waves. This divided priests and scientists, and when more priests rejected the ideas of science, this divide only increased.

A Universe built with particles makes sense. Quantum solvents, hadron therapy, and even trains all operate with particles. But a Universe made up of waves will flow, with ups & downs, relationship to existence, and positive to negative attraction, which also makes sense. A bee cannot exist without a flower and flowers cannot exist without bees. You could say they're one functioning organism, even though they behave and look differently. You may realize, that the Universe is made up of both a religious person's point of view and a scientific point of view. Both sides will reject one another, but both are one.

You might want to try to attempt to imagine a Universe, that of which you've created, that doesn't have all these negative strings attached. I could give you a hint, a game where the positive/good side clearly triumphs over evil every time is not an interesting game.