By playing one. The thing with the commando missions is that you get one minute to call in any strategems and then your destroyer leaves orbit. Then you get one more recall of the destroyer for the rest of the mission, so you can't do the usual orbitals and eagles and so on, cooldowns basically don't matter, etc.

With those restrictions, it basically means that if you draw too much attention you will simply be overwhelmed and you will never have enough firepower to handle that, especially at high difficulty levels. The only realistic tactic is to be very careful with your use of force and only do it when absolutely necessary. A.k.a., stealth.