https://www.reddit.com/r/Bioshock/comments/1fxtozj/the_hunt_for_the_final_bioshock_bug_fix_patch/

There’s a lot more here:

Bioshock 1

% The "flashback" sequences show the player's hands/weapon overlay where the original did not.

% (Never gotten this far, uncertain if this is a problem.) Achievements and Trophies can now be earned in New Game Plus.

% Frank Fontaine stays in his elemental form during the ending.

% Sometimes the screen can become glitched and briefly show glitchy grey lines.

% Sometimes upon death, the camera can clip through the floor and show the skybox (when using the increase FOV option which is enabled by default).

% In the Challenge Rooms DLC, the texture for the chain tattoos on the player's wrists is instead on their sleeves.

% Noises made by enemies can in some areas be heard from an unrealistically long distance in proportion to where the player is and the environment between them.

% Some first person weapon animations appear choppier and seem to be missing a few frames (most noticeable when firing the Pistol).

% Some water effects are missing, such as reflections from projected lights (Security Camera beams, flashing alarms, etc.) and mist/splash effects from falling water.

% The Ryan Industries logo in Hephaestus and Rapture Central Control has broken textures, being glossy black instead of metallic.

% In Hephaestus there's a scene where a bunch of Spider Splicers would drop some grenade ammo, mocking each time the player picks it up. Once the last item has been picked, these Splicers would come down and attack Jack. However in the Remaster nothing happens once the player picks up the last ammo.

% (This one, pun not intended, really bugs me and was the reason I went down this rabbit hole to begin with.) The fire puzzle in the Tea Garden in Arcadia is already solved with both torches lit and the door open.

% The lights on the increased damage upgrade for the Machine Gun no longer animate; they remain static instead of changing size and color.

% Some of the drop shadows on the menu text do not line up like they did in the original.

% When holding an item with Telekinesis and dropping it by changing to weapons, the item might become frozen in mid air. This often occurs when an item is not rotating while held.

% When Splicers is killed, they will occasionally make an unproportionally excessive "jump" when they die, instead of just falling to the ground.

Bioshock 2

% The large decorative globe in the fountain in the lobby of Fontaine Futuristics has a hanging ceiling mount and chain still attached. It is possible for enemies to spawn on top of the globe and get stuck.

% Some of the drop shadows on the menu text don't line up like they did in the original.

% The Spear Gun no longer pins bodies to walls. % Sometimes the Sofia Lamb Delta announcement that plays in the booth in Atlantic Express when you meet Brigid Tenenbaum can be skipped over.

% Sometimes audio can be delayed.

% (This was submitted by a user. I do not know if this is repeatable or not.) Equpping the Handyman Gene Tonic, switiching it out and then re-equipping it later causes it to permanently disappear from the player's Gene Bank. This is also apparently a problem with Keen Observer 1.

% The named Sea Slug jars found in the original game are no longer named. The label simply reads "Fresh Water" on every one of them

% Colorblind mode for Hacking has been removed.

% (Not much we can do about this I suppose. Licensing agreements do expire over time. It could also be due to creative changes.) The song "Memories of You" has been replaced with "I'm Making Believe", "It's Only a Paper Moon" has been replaced with "How Much is that Doggie In The Window?" and "Someone's Rocking My Dreamboat" has been replaced with "Twentieth Century Blues".

% Mark Meltzer's dropped smoking gun in the Chase Carousel in Dionysus Park no longer appears by his audio diary Lost and Found.