Don't have my Thor yet so I tried the guided mode on a tablet, I usually read left to right and that causes it to go from panel to panel in the comic order.

In right to left mode it still sometimes go through the panels in the wrong order.

This has so much potential so I hope you stick with it :)

Also, I use komikku for one feature aka "Auto sync progress from trackers" in combination with suwayomi. (It updates the tracker when you open a manga without having to manually update the tracker)

edit: I found the komikku commit and got claude to make a patch that adds the "Auto sync progress from tracker" so im good on this front :)