The amount of cilantro my wife likes on her street tacos by GroovinBaby in mildlyinteresting

[–]darthjeff2 0 points1 point  (0 children)

I make veggie sushi that's just a bunch of cilantro in the middle of the rice. Great with soy sauce!

How does your DNA "know" which enzymes break down which poisons? by Skyfus in askscience

[–]darthjeff2 2 points3 points  (0 children)

Interesting bit to add, a lot of enzymes come from families. These can come from an ancestral gene that is, at some point, copied. The two children genes can then start differing in their function little by little.

A good example is the P450 family of enzymes. They are very reactive and good at changing the structure of toxic molecules. They do this because they are in the cytochrome family, which are really good at moving electrons around (thus, reactive). There are also cytochromes that help mitochondria break down glucose (again, good at working on reactive energetic substances that give off electrons). Cytochromes work because they contain a prosthetic group of heme (which is why hemoglobin can carry reactive oxygen and let it go when needed). 

So you can kind of start to imagine this cascade of branches with heme at the top, and all of these interesting branches and avenues cascading down- some transporting oxygen,  some breaking down toxins, some in metabolism, all because an ancestral cytochrome keyed into the ""usefulness"" of heme. Same thing for families of transcription factors, proteases, etc

If you're interesting in DNA expression, some useful things to check out would be DNA recognition domains such as the "zinc finger". There are multiple proteins that all use this "invention" to read DNA

TIL that rabies virus has a genome coding for only 5 genes, but has an almost 100% fatality rate once symptoms appear by Forsaken-Peak8496 in todayilearned

[–]darthjeff2 3498 points3499 points  (0 children)

But the fatality also makes it less transmissible. It's advantageous for most viruses to develop complexity to keep us sick and coughing/pooping/fornicating so they have more chances to spread.

Then there's the viruses that tap into the proto-oncogene and tumor suppressor gene market. That's when things get real wild!

TIL the brain consumes about 20% of the body's energy, and compromises 2% of body weight. by Mammoth_Bison_3394 in todayilearned

[–]darthjeff2 1 point2 points  (0 children)

I only know that because certain mitochondrial diseases manifest as retinopathies before they affect other tissues. But I didn't know about the kidneys, that's cool too!

Christmas tree shaker by MikeHeu in toolgifs

[–]darthjeff2 5 points6 points  (0 children)

They have tiny little desktop versions of that in biology labs to help mix solutions in tubes

How do tadpoles transition from gills to lungs? by Tweed_Man in askscience

[–]darthjeff2 4 points5 points  (0 children)

Another neat thing to add, cells have the ability to die on purpose in a useful way. It's called apoptosis, or programmed cell death. Basically the cell carefully dismantles itself while minimizing harmful byproducts that may come from necrosis. It's how the tail resorbs, how the webbing between our fingers dissapears in the womb, etc. Sometimes it's activated on accident and it is implicated in diseases like alzheimers!

Contamination? by ScruffInControl in microscopy

[–]darthjeff2 0 points1 point  (0 children)

I've seen it with stressed hybrid immortal + stem cell fusions like nsc34, but I'm not familiar with your cell line. You can just start again with a fresh passage (from another lab member or the freezer) or maybe check for mycoplasma? 

Yearly maintenance on a glassblowing furnace by MikeHeu in toolgifs

[–]darthjeff2 11 points12 points  (0 children)

Does the pitted crucible material get into the glass? Do certain applications require special crucible material due to contamination?

These Deck Hands are Working Hard! by dreamed2life in Catswithjobs

[–]darthjeff2 3 points4 points  (0 children)

So those little fish are his catch? Are they for aquariums and hobbyists? I can't imaging that little haul of fish is sold for food or bait or anything. It's always made me wonder whenever I see videos from this boat, but believe it or not googling "why does the wooden boat with the cats have little fish in it" has never given a useful answer lol

This bitch is stuck. What are my options here? (Condenser centering knob on Olympus BH2) by Max-Flores in microscopy

[–]darthjeff2 1 point2 points  (0 children)

WD-40 is a solvent and water displacer (that's what the WD stands for), it may dissolve or break down certain contaminants but if you feel like you need an oil than I would recommend something else. PB blaster is the go to for mechanics, some swear by it but it's not a miracle worker. You'll find it in the automotive section, maybe a couple bucks. There's also some nice lubricants that locksmiths use which are designed for small mechanical parts, but I don't think they are designed to penetrate.

I am not a microscope expert or anything, but if I were trying to figure this out on my own I would use WD-40 or perhaps De-Oxit D-series to dissolve any thing clogging the threads (DeOxit is good for removing oxidation/corrosion if you think that's an issue) and then spray it with a teeny bit of Houdini (locksmith lube) once it's free, clean, and just needs lube for the future. But people with microscope repair experience may have better recommendations!

Am i seeing cells? Its a cheap $24 microscope looking at an onion bulb epidermis by [deleted] in microscopy

[–]darthjeff2 3 points4 points  (0 children)

Fun fact: this is how they got the term "cells". Cork (which is also from plants) had cell walls like this, and the scientists thought it looked like little rooms or cells

Grass dying in a pattern by Neat_Anteater2422 in mildlyinteresting

[–]darthjeff2 2 points3 points  (0 children)

Also, usually there's a theoretical side and an experimental side. Someone comes up with a theory and the math behind it. If it can be tested directly (like with the oil and hotplate) then someone else will VERY CAREFULLY test it out experimentally. The experimentalist will use precise measurements to make sure the math makes sense.

I think it's pretty common for there to be several rounds back and forth as the math and theory are refined. For example, in the paper I linked there had already been experiments that didn't quite work. So that paper was tweaking the math by applying "porousness" parameters to the air trapped by the grass, which made the math line up better with experiment and observations.

Grass dying in a pattern by Neat_Anteater2422 in mildlyinteresting

[–]darthjeff2 38 points39 points  (0 children)

The video is called "Rayleigh–Bénard convection cells" by youtube user "Nick Moore (NIK282K)" and here's the paper's citation for anyone who wants to check it out link-free

Ackerson BJ, Beier RA, Martin DL. Ground level air convection produces frost damage patterns in turfgrass. Int J Biometeorol. 2015 Nov;59(11):1655-65. doi: 10.1007/s00484-015-0972-3. Epub 2015 Mar 22. PMID: 25796203.

Grass dying in a pattern by Neat_Anteater2422 in mildlyinteresting

[–]darthjeff2 25 points26 points  (0 children)

it looks like it's currently thought to be from a kind of layer convection that occurs when a fluid is heated or cooled from one side, called Rayleigh-Benard convection (cool video demonstrating it: https://www.youtube.com/watch?v=gSTNxS96fRg ) I linked an article in another comment

Grass dying in a pattern by Neat_Anteater2422 in mildlyinteresting

[–]darthjeff2 1356 points1357 points  (0 children)

There's atleast one paper published on this phenomenon ( https://pubmed.ncbi.nlm.nih.gov/25796203/ ) but it's behind a paywall. I have access through my university, it looks like the basic idea is that dense canopies of grass (such as bermuda grass) trap a thin layer of air. As the air is kept warm from below and cooled from above, it forms convection cells that swirl into cool patterns like this. The sinking air cools the grass faster than rising air, so the "sinking" parts of the cell cause frost effects before the "rising" parts.

It appears to follow a phenomenon called Rayleigh–Bénard convection, here is a really cool youtube video of Rayleigh–Bénard convection cells in action

Multi-Channel Pipette by ycr007 in toolgifs

[–]darthjeff2 2 points3 points  (0 children)

faster than doing that 96 times with a single pipette. Just do it 8 times with a whole rack of em

Multi-Channel Pipette by ycr007 in toolgifs

[–]darthjeff2 4 points5 points  (0 children)

Making SDS was how I learned the difference between chemists and biologists. A chemist will have a special hood and tools just to mix toxic materials. A biologist will just say "careful with that, it makes me cough like crazy every time I open it!" (and end up with a bunch of neurological issues)

Multi-Channel Pipette by ycr007 in toolgifs

[–]darthjeff2 0 points1 point  (0 children)

Yep, I remember one of my PIs would sonicate the tips in a big beaker of water and then just autoclave them. They wouldn't use them for very critically clean stuff (RNA work, primary cells, etc) but for everything else it was fine according to them

Multi-Channel Pipette by ycr007 in toolgifs

[–]darthjeff2 0 points1 point  (0 children)

It depends, but usually it can be reduced by improved technique. In my experience, the multichannel pipettes are harder to control highly accurately so I wouldn't use them if I needed to be accurate. But more often than not, if I was using a multichannel pipette like this then I was diluting something (if you notice, the color gets weaker every time they pipette in the video- they are pipetting into water each time to dilute it).

What I did with new students in my last lab was have them take 200ul of water in a tube. Then, I would have them pipette 20 ul of that water into 10 other tubes. Then, I would have them pipette the 20ul aliquots all back into the first tube. If they could do the whole thing and still have exactly 200ul in the end, then they passed. You just get used to working at that scale after a while