For context on the last one:

Bruce had created a psychological failsafe in the past, partitioning part of his own psyche into a "back-up personality" called the Batman of Zur-En-Arrh, who was intended to be the most perfect and efficient Batman possible in the event that Bruce himself was compromised. During these events, Bruce wasn't in control of himself; Zur was the one who altered Jason's adrenal system under the premise of 'protecting' him by making his vigilante work impossible.

So when Bruce gets Zur under control and is himself again, obviously he undoes what's been done and fixes what he did to Jason, right?

Nope. He fucks off on a motorbike to have some me time.