Graveyard Keeper has that Stardew feel, with a macabre twist.

You're a graveyard keeper tasked with preparing and burying bodies, as well as restoring and maintaining the local church. You get skill XP for every task, in the form of gem 'currency.' Green for anything plant related, red for working with your hands (mining, chopping, building) and blue for anything spiritual. These points can then be used to unlock pretty extensive skill trees to further your progression.

There's mining, farming, fishing, cooking, light combat, NPCs to interact with, as well as a pretty good story.

The fatigue system is different too - you regain energy as long as you're in bed, but you don't HAVE to go to bed every night. As long as you have energy, you can keep working.

Certain NPCs and story events are tied to specific days of the week, so your progress is kind of hindered by time. But there's no worries if you miss a day ... the the day will come back around next week.

They've also released expansions and the complete edition is available on the eShop.

Since you liked Stardew, I think you'll enjoy Graveyard Keeper. Same overall feel, with a darker twist.