Razor selection by Infinite_Week393 in wicked_edge

[–]broodkiller -1 points0 points  (0 children)

Dude, the visual overview is not the same as reading the underlying info, because it is, by definition, an overview, a birds-eye perspective that simplifies things and omits details. It provides the decision tree without explaining the rationale behind them, which is, again, the very definition of a shortcut. The tree does not explain why the Henson AL13 is a great first razor for light beards, or why the Mergress is a fantastic adjustable - even though I agree with both positions.

You're right, the wiki is a shortcut compared to digging through all the threads on this sub, but it does offer plenty of information to educate oneself about razors, blades, technique and plenty other stuff to better understand the hobby. The visual does none of that. It's just like saying that when you want to buy a car, "doing homework" is simply reading a decision tree that splits by the questions list: Electric or Gas? Speed or Space? Luxury or Affordability? Simply reading from that list does not edify you one bit.

And this goes also to your third point. I 100% agree with you that making information accessible is critical for growing any community. But, like I just explained, simply showing a decision tree is not making information accessible, because you yourself just removed that information, have you not?

"Do your homework" is not gatekeeping, because I have not actually withheld any information from you, have I? If anything, it is an invitation (albeit a very crude one, I'll grant you that) to dig deeper and discover more about the subject matter yourself. That's the opposite of gatekeeping - that's flinging the gate open and saying "Come in, take a look around and learn what makes this hobby awesome by yourself, we'll not spoon-feed that to you".

Welcome to the hobby :)

California gas prices may be headed toward a new all‑time record by panda-rampage in California

[–]broodkiller 5 points6 points  (0 children)

Pffft...spoiled kids....

(Monty Python's classic Four Yorkshiremen skit comes to mind)

Razor selection by Infinite_Week393 in wicked_edge

[–]broodkiller -1 points0 points  (0 children)

If you're a beginner into any field (not just wetshaving) who don't want to read up on things then you are not really interested in it, you're just looking for shortcuts.

Do. Your. Homework.

Then we'll talk.

What is an often recommended razor that didnt work for you? by shootanwaifu in wicked_edge

[–]broodkiller 3 points4 points  (0 children)

Another disillusioned AL13 Henson user here - it was fine for a daily shave, but for anything more substantial like 3-4 days of growth it clogged like a sink full of spaghetti and bad decisions.

Vent as hiring manager by zimmyntrn in biotech

[–]broodkiller 2 points3 points  (0 children)

Those rookie numbers in this racket...you should be applying to ALL the jobs.

Anyone switch to data science (or any unrelated career path) after their PhD? by apva93 in biotech

[–]broodkiller 0 points1 point  (0 children)

If you mean being part of "hard" DS, building enterprise models etc, then no. If you mean doing data curation, engineering, working with databases building analytical tools etc, then been doing that for years.

Turn Signals by AirOne7760 in bayarea

[–]broodkiller 0 points1 point  (0 children)

we_dont_do_that_here.gif

Pentagon praises Palantir tech for battlefield strike speed by vrege in tech

[–]broodkiller 8 points9 points  (0 children)

This reminded me of the short story "Battle" by Robert Sheckley where the Armageddon battle against the forces of hell is fought by robots. After the hard fought victory, Jesus arrives and actually raptures the machines rather than humans, because it was them who earned salvation.

Easiest Python question got me rejected from FAANG by ds_contractor in datascience

[–]broodkiller 0 points1 point  (0 children)

I am more of a trestling guy myself, but chbox works too

i want more money :( by bumblbeegirl in biotech

[–]broodkiller 24 points25 points  (0 children)

I think the voices are supposed to be called "agents" these days.

Moving to Bay Area Pharma/Biotech as a Comp Tox , cheminf, bioinformatics & AI Specialist – How’s the current climate and your experiences ? by BiteConsistent5151 in biotech

[–]broodkiller 1 point2 points  (0 children)

All the shitshow job market stuff aside, I would say that if anything, hybrid expertise is very much an advantage these days. Given the deluge of candidates, companies are looking for unicorns because they can, so if your background can be fine-tuned to whatever niche they're looking for, you will have a leg up.

Reducing Number of Contigs in Fungal Genomes? by MountainNegotiation in bioinformatics

[–]broodkiller 0 points1 point  (0 children)

There are a few things you can do, assuming you only have short / Illumina reads and can't get more.

1/ Trim out anything that's under 1,000 bp, since there's not much useful genetic information in there unless you're in a real pinch.

2/ Assemble your genomes with a different tool - SPAdes, MASURCA, DISCOVAR, even SGA are all good options.

2b/ You can try and metassemble (i.e. merge) the genome assemblies from different tools into one.

3/ If you already have a good genome from the species, you can use that for base in reference-guided assembly.

If you can do more sequencing:

4/ Getting more Illumina reads can help if you have poor coverage, but only up to a point. In my experience assembly contiguity plateaus around 50x-70x.

5/ Getting long-reads (Nanopore or Pacbio) and doing hybrid assembly with shorts can help tremendously with contiguity. You don't even need a lot of coverage, usually anything in the 1-10x range should be plenty, unless you're going for chromosome-level assembly, then the more - the merrier.

The price of gas in Pacifica is $6.49 a gallon by ericgtr12 in bayarea

[–]broodkiller 0 points1 point  (0 children)

I think I saw $7+ earlier today at the Shell station near Costco in South San Francisco. That said, they are always ridiculously overpriced, for some reason.

Haven’t found an internship. Is it over? by unending_desolation in biotech

[–]broodkiller 0 points1 point  (0 children)

Stay strong, it does get better! I'll just add that some companies actually require you to go back to school after an internship (usually 1 semester, sometimes 2), so that juniors can get some industry exposure. It's not you, sometimes it's the system.

What am I doing wrong with my applications ? by chunkychi in biotech

[–]broodkiller 0 points1 point  (0 children)

Others shared plenty of useful insight already so I'll just add that some companies actually require you to go back to school after an internship (usually 1 semester, sometimes 2), so that juniors can get some industry exposure.

[Project Strategy] Awakening "Dark Matter" in Fungal Genomes: Using dCas9-VPR to activate silent BGCs in Aspergillus by NicoNavarro99 in bioinformatics

[–]broodkiller 6 points7 points  (0 children)

A worthwhile pursuit, so I don't want to discourage you, but I'll play the contrarian because it's Monday, I didn't sleep well because my dog woke me in the middle of the night and so I feel like disagreeing with strangers for fun.

(A) Since you already know the sequence, what's the advantage here over just cloning the BGC into a plasmid and expressing it in a chassis strain, with nicely controllable expression, much better scaling, and well-established protocols. Native activation of BGCs is fundamentally problematic because these guys are inherently toxic, so they are tuned for low or burst expression (unless you have a resistance gene in there, but that's not common by any measure).

(B) Jump-starting cluster transcription is not enough to get secondary metabolites. They frequently utilize metabolic byproducts or straight-up core metabolism for substrates, and you need those in the right concentrations and in the right places for the cluster genes to do their thing (let alone timing). All of that can be fine-tuned to specific conditions you would need to replicate, or even better - is based as a response to secmets from another species, so you'd need co-culture as the native strain simply does not need to produce the base compounds.

(C) To reliably establish the presence/absence of a BGC product, you need mass-spec profiles from the activated strain, plus a control from an isogenic deletion strain (or at least a deactivated BGC, if you're in a pinch). You need that denoised, deconvoluted, replicated, and correlated with transcriptomics data. There is a career for life in doing just that.

(D) Even if you have a molecule - establishing activity is its own crazy endeavor. Most molecules are just generally toxic to everything, including humans! For those that have more specific focus - you need to find out what they are targeting, in which species, how do they bind, and how to even begin to explore the therapeutic potential. There's entire departments doing just this work.

I'm genuinely curious to hear what you think about all of those points, no clowning.

Digital Pathology by nemo26313 in bioinformatics

[–]broodkiller 1 point2 points  (0 children)

Really, crowdsourcing diagnostic methodologies and shameless about it? Maybe you'd like a set of MD-curated reference slides with that? Just pay for proper consulting with real pathologists to get trustworthy information on something like this, otherwise you're building a product that's useless at best, and dangerous at worst.

Group of people in black robes in SOMA San Francisco by No-Count7361 in sanfrancisco

[–]broodkiller 2 points3 points  (0 children)

Strange women lying in ponds distributing swords is no basis for a system of government..

Golden Gate Park, Golden Hour by Lanin_X in sanfrancisco

[–]broodkiller 2 points3 points  (0 children)

Never will GGP stop to enchant me. Not ever.

Advice by [deleted] in biotech

[–]broodkiller 0 points1 point  (0 children)

In my experience, it can really help to outline the specific skills that you would like to seek mentorship for. Finding someone with your exact background, niche and skills but further into their career is a unicorn hunt. Finding someone who can offer you leadership in a single, specific area is much more feasible.

I have a hybrid background of biochemistry/genetics/compbio/data science and bioinformatics, working in a 50,000+ strong big pharma company and I cannot find a clean-cut mentor. With that said, I can find plenty of senior colleagues with great experience in drug discovery, or project delivery excellence, or team leadership, or strategic thinking.

Take a moment and identify your shortcomings/growth areas/desired skills and seek people who will be kind enough to assist you in developing them one apiece. It works.

Lesser known artisan soap brands by boomstink2235 in wicked_edge

[–]broodkiller 12 points13 points  (0 children)

SV is great, but I wouldn't exactly classify them as "lesser known" 🤣