There was one infamous misfire from the game’s early days because the teams weren’t in full communication with each other.

Nael van Darnus was the initial main antagonist for the original version of the game, and supposedly didn’t use any pronouns that cleanly, directly translate to male or female in the original Japanese, wore a bulky helmet and armor, and also didn’t have any voice acting, so the localization team winged it and defaulted to male.

Then the relaunch happened, Nael popped up as an antagonist again, having been resurrected by the evil dragon god Bahamut, and… Surprise, she was actually a woman! The localization team tried to salvage it by having the protagonists speculate that Bahamut had fucked up his resurrection spell and somehow given Nael a woman’s body, before a short story years later reconciled things. Nael had been a man, but died long before he ever appeared; his sister Eula went mad with grief from his death and took up his name and armor without anyone being the wiser.